BAC Information

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BAC

Clone NameMSMg01-439I23
Chromosome3 (Build37)
Map Location 153,026,150 - 153,188,840
singlet/doubletdoublet
Overlap geneSt6galnac3
Upstream geneUsp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
Downstream geneEG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439I23.T7 (MSMg01no439_i23.b1)MSMg01-439I23.TJ (MSMg01no439_i23.g1)
ACCAG529884AG529885
length744726
length of high quality
(start - end)		466 (46 - 511)243 (326 - 568)
definitionCHROMAT_FILE: MSMg01no439_i23.b1 PHD_FILE: MSMg01no439_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:43 2005CHROMAT_FILE: MSMg01no439_i23.g1 PHD_FILE: MSMg01no439_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,188,378 - 153,188,840)(153,026,150 - 153,026,392)
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATAGACTCTCCGTGAAAGTCACTGTAAATATTTTATGAGATCTG
CCTCCTGTGGTGGGGCTTGCTCAGCAGGGAGAGGCATCTGTGGTCCCTCA
ACTGAATAATTTGTTTTCTTAAGCTTTGCTTTATATCCTGGAGGTAGAGT
CTAAATGCTCTTAAACTATTTTGATTTTGAGTCCTCACAAAAGTCTTCTT
TCTTTCACAGTAACTCAGTGTAAAAGGCAATAAAAATGATATATTCAGAA
GTACTTGGGACCCGCTCTCATTGCCACATGGGAATAACGTATGTTGCTGC
TTGTTCATCCCATGGGACAGAGCTGGCTGCTCACATTAGGAAATGCTGCC
TGTGTTTGCCTCTGGTCTGCCACCAGTGTCTGCTCCCCTGAAAGGCAGGC
CTTTTGCAGATAAAAGGTGCCCTGCCTTGCTGAACTGCTCCTCTGTGTTT
CTCAGGGAGAAAAAGCCTTTGTCAAAACAGGAGCCAAATCTGATTTGCAG
ATTATCCCCTAAAAATAAAACACTGAAAATGTCAAAATATTCTAAAAATT
GGGCCCACTTAAGGTTTTGGGAAAAATACCTTACGAGTGGGGGGAAAAAG
GTTCTAAAAAATCCCCAAATTTTTTGTTGCCTAAAGGCCCTGGGTGGCCT
AAAAACTGGGGAAACCAACCCTCTTCGGGGGTATTTTTCTTTTT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCAGAAATTCCATTGGCTGGTAAAAATGGAGGCCCCA
CAGTTTACCTAACACAACAGGGCTAAGCTGTGTGCTAACATTTCAAGGGA
CAAATTCAAAGAAGATGACAAAATGACATTATTCTGCAAAATCCAATTAA
ACTTCCATTAAAATATTTAGAAATCTGTTTTCCTTCATATTAATTTCTCT
GACATATTTATATTTTAAAATAAATGCACTGGGTTAAACTTTATAAATAG
TGGTGGTGATTTCTACAATTTCTTTGACTTTAAGCAGGGCAAGGAATGTT
TGAACACAAGTCACAGACTGGGATGTCACTTAAACAGTATGTGTCCAAAA
GGTAATGTATTTTGCATAGCTATCTAGCACACACAGAGATACGGACTAGG
TCCTATGCTGCATGCTAAGCGTGCCTTCCACTCATGAGCTGCACCCCAGC
TTCTCCATGTGAAATGTTAGCTTAGGGTGCACAGTATTCAGACATTCTCA
GTGCATCGTCTTGAGTGAGCATTCCAGNGAGTTTCTGAGGCTGGGAGGTG
GCTCAGCTGACTACACCCTAATGGAAGGAAATCAATCAGGGAGACACTTG
TTACTACTTAATTCCCCACCTGAAAAAATGGTGCATCTTTCCCAAGGGCT
CCCTGAACAAAAGGAACCCTCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_i23.b1 MSMg01no439_i23.b1 CHROMAT_FILE:
MSMg01no439_i23.b1 PHD_FILE: MSMg01no439_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:43 2005
         (466 letters)



>mm_chr3_153188175_153189040
          Length = 866

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctatagactctccgtgaaagtcactgtaaatattttatgagatctgcctcctgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ggaattctatagactctccgtgaaagtcactgtaaatattttatgagatctgcctcctgt 607

                                                                       
Query: 64  ggtggggcttgctcagcagggagaggcatctgtggtccctcaactgaataatttgttttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggtggggcttgctcagcagggagaggcatctgtggtccctcaactgaataatttgttttc 547

                                                                       
Query: 124 ttaagctttgctttatatcctggaggtagagtctaaatgctcttaaactattttgatttt 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 546 ttaagctttgctttatatcctggaggtagagtctaaacgctcttaaactattttgatttt 487

                                                                       
Query: 184 gagtcctcacaaaagtcttctttctttcacagtaactcagtgtaaaaggcaataaaaatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gagtcctcacaaaagtcttctttctttcacagtaactcagtgtaaaaggcaataaaaatg 427

                                                                       
Query: 244 atatattcagaagtacttgggacccgctctcattgccacatgggaataacgtatgttgct 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 426 atatattcagaagtacttgggacccgctctcagtgccacatgggaataacgtatgttgct 367

                                                                       
Query: 304 gcttgttcatcccatgggacagagctggctgctcacattaggaaatgctgcctgtgtttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcttgttcatcccatgggacagagctggctgctcacattaggaaatgctgcctgtgtttg 307

                                                                       
Query: 364 cctctggtctgccaccagtgtctgctcccctgaaaggcaggccttttgcagataaaaggt 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 306 cctctggtctgccaccagtgtctgctcccctgaaaggcaggccttttgcagataaaagat 247

                                                      
Query: 424 gccctgccttgctgaactgctcctctgtgtttctcagggagaa 466
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gccctgccttgctgaactgctcctctgtgtttctcagggagaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no439_i23.g1 MSMg01no439_i23.g1 CHROMAT_FILE:
MSMg01no439_i23.g1 PHD_FILE: MSMg01no439_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:43 2005
         (243 letters)



>mm_chr3_153025950_153026592
          Length = 643

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactttaagcagggcaaggaatgtttgaacacaagtcacagactgggatgtcacttaaac 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 gactttaagcagggcaaggaatgtttgaacacaagtcacagtctgggatgtcacttaaac 260

                                                                       
Query: 61  agtatgtgtccaaaaggtaatgtattttgcatagctatctagcacacacagagatacgga 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtatgtgtccaaaaggtaatatattttgcatagctatctagcacacacagagatacgga 320

                                                                       
Query: 121 ctaggtcctatgctgcatgctaagcgtgccttccactcatgagctgcaccccagcttctc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggtcctgtgctgcatgctaagcgtgccttccactcatgagctgcaccccagcttctc 380

                                                                       
Query: 181 catgtgaaatgttagcttagggtgcacagtattcagacattctcagtgcatcgtcttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgtgaaatgttagcttagggtgcacagtattcagacattctcagtgcatcgtcttgag 440

              
Query: 241 tga 243
           |||
Sbjct: 441 tga 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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