BAC Information

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BAC

Clone NameMSMg01-439J03
Chromosome3 (Build37)
Map Location 111,502,539 - 111,503,054
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043190, LOC668712
Downstream geneLOC625585, EG229746, LOC668717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439J03.T7 (MSMg01no439_j03.b1)MSMg01-439J03.TJ (MSMg01no439_j03.g1)
ACCAG529892AG529893
length711697
length of high quality
(start - end)
522 (52 - 573)486 (80 - 565)
definitionCHROMAT_FILE: MSMg01no439_j03.b1 PHD_FILE: MSMg01no439_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:43 2005CHROMAT_FILE: MSMg01no439_j03.g1 PHD_FILE: MSMg01no439_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTACTTCTTAATAACAGCAAGTAAAGGTGGGTTAAGAA
ATCGAGACTTCTGCATATTCTCTGCTAATATCGGTCATTCCATACTTACT
TTTATTTACCAAAGTAAAACAACTCCATTGTGAGACAGTAAATCAATAAT
TACCTAAGTAAGAAAACCCAGTTTTTTTTGTGGGACATCAGTCTTATTCT
TTCAAAATCGAAATTATTAACAATGTATCATTTGTTTCAGAATTTGAAAA
AAATCTTACATGTAGCCTATCATGAATTATTCTGATTTAGGCTATAAACT
GTCTTTAGCGTAATTGAAAAGTTATAATCCGTCATGTATGCACTTAGGTC
AAAAGATATGCAGTATAAGGATAATAGCTTTAACTCTGAAGTTACATTAG
AAAATTAAATTTATTTATAGTAGGGGGTGTGTCATCTGCATGTGCAACAC
TGCATATGTGGAAGTCAGAAGACAATTTGCAAGTACTGGCTTTCTAAGTT
CCCCAAGTTGTTCCCAGGAATTACACTAGAATGACTGTGCATAATAACAA
GTAACTTTTTCCTGCCAAGTCATCTTACCAGCCTAGTCTGAAAAAGAAAA
ATTCTGACTTCCTTGTTTTACCTTTCCTTCATATGAGATCCCCAGGGCTG
CCCTGGAAATC
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACCATGCATGTCATTTGGG
GTCTGGTTTACCTCACTCAGGATGATATTCTCAAGATCCATCCATTTGCC
TACAAATTCATGTCTTTGTTTTTCCTAGTTGAATAGTATTCCACTGTATA
AATTAACCACGTTTTCTTTATCCATTCTTAGGTTGAGGGACATCTAGGTT
GCTTCAAGTTGCTGGCTCTTATGAATAAAGCTGCTATGATCATAGTTGAG
CAACTATCTTTGTGGGACCATGGAACATCTTTTGGGTATATGCCAAGGAA
TGGTATGGCTGGGTCTTGAGGTAGAACTATTCCCAGTTTTCTTTTTTTTC
TTTTTTTTTTTGTTTGTTTGTAACTTTAATATTTTCAAACCCTTTTTTTT
CCTTTTTTTTTCCATTTTTATTAGGCATTTAGCTCATTTACATTTCCAAT
GCTATACCAAAAGTCCCCCATACCCACTCACCTCCACTCCACTACCCGCC
CACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGT
TTGTGTGTTCAATGCGTCTCTTATTGCATATTCTATCAAGACTCTATTTC
CAGCCTTCTAAAAAAACTAATTTTCTCTTGTTGATGAAACTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_j03.b1 MSMg01no439_j03.b1 CHROMAT_FILE:
MSMg01no439_j03.b1 PHD_FILE: MSMg01no439_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:43 2005
         (522 letters)



>mm_chr3_111502335_111503254
          Length = 920

 Score =  870 bits (450), Expect = 0.0
 Identities = 501/518 (96%), Gaps = 2/518 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttacttcttaataacagcaagtaaaggtgggttaagaaatcgagacttctgca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttacttcttaataacagcaagtaaaggtgggttaagaaatcgagacttctgca 264

                                                                       
Query: 65  tattctctgctaatatcggtcattccatacttacttttatttaccaaagtaaaacaactc 124
           || ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 265 tagtctctgctaatatgggtcattccatacttacttttatttatcaaagtaaaacaacta 324

                                                                       
Query: 125 cattgtgagacagtaaatcaataattacctaagtaagaaaacccagttttttttgtggga 184
           ||||||||||||||||||||||||||| |||||||  |||||||||||||||| ||||||
Sbjct: 325 cattgtgagacagtaaatcaataattatctaagtattaaaacccagttttttt-gtggga 383

                                                                       
Query: 185 catcagtcttattctttcaaaatcgaaattattaacaatgtatcatttgtttcagaattt 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 catcagtcttattctttcaaaatagaaattattaacaatgtatcatttgtttcagaattt 443

                                                                       
Query: 245 gaaaaaaatcttacatgtagcctatcatgaattattctgatttaggctataaactgtctt 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaaaaa-tcttacatgtagcctatcatgaattattctgatttaggctataaactgtctt 502

                                                                       
Query: 305 tagcgtaattgaaaagttataatccgtcatgtatgcacttaggtcaaaagatatgcagta 364
           |||| |||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct: 503 tagcataattgaaaagttataatccctcgtttatgcacttaggtcaaaagatatgcagta 562

                                                                       
Query: 365 taaggataatagctttaactctgaagttacattagaaaattaaatttatttatagtaggg 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 563 taaggataatagctttaactctgaaggtacattagaaaattaaatttatttatagtaggg 622

                                                                       
Query: 425 ggtgtgtcatctgcatgtgcaacactgcatatgtggaagtcagaagacaatttgcaagta 484
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggtgtgtcatctgcatatgcaacactgcatatgtggaagtcagaagacaatttgcaagta 682

                                                 
Query: 485 ctggctttctaagttccccaagttgttcccaggaatta 522
            |||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttggctttctaagttccccaagttgttcccaggaatta 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 920
Length adjustment: 10
Effective length of query: 512
Effective length of database: 910
Effective search space:   465920
Effective search space used:   465920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)