Query= MSMg01no439_k03.b1 MSMg01no439_k03.b1 CHROMAT_FILE:
MSMg01no439_k03.b1 PHD_FILE: MSMg01no439_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:48 2005
(584 letters)
>mm_chr3_44267923_44268906
Length = 984
Score = 453 bits (234), Expect = e-131
Identities = 261/283 (92%), Gaps = 20/283 (7%)
Strand = Plus / Minus
Query: 302 atatatatatatatatatatatatatatatataattgcatgttctgcatttatttttgta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 atatatatatatatatatatatatatatatataattgcatgttctgcatttatttttgta 858
Query: 362 cctatgagaaatatacatatatacattatgggcaagatagatagatagatagatagatag 421
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 857 cctatgagaaatatacatatatacattatgggca--------------------agatag 818
Query: 422 atagatagatagatagatagatagatagatagaaatatcttaccaaaagggcaatagatt 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 817 atagatagatagatagatagatagatagatagaaatatcttactaaaagggcaatagatt 758
Query: 482 aattaagaacagagtattatgaaaagagaaatgtatcactatatttggaatttgttgaat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aattaagaacagagtattatgaaaagagaaatgtatcactatatttggaatttgttgaat 698
Query: 542 aatatgactagatccagntagacatcaattattacctcaccta 584
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 697 aatatgactagatccagttagacatcaattattacctcaccta 655
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 302 atatatatatatatatatatatatatatatata 334
|||||||||||||||||||||||||||||||||
Sbjct: 886 atatatatatatatatatatatatatatatata 918
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 302 atatatatatatatatatatatatatatatata 334
|||||||||||||||||||||||||||||||||
Sbjct: 888 atatatatatatatatatatatatatatatata 920
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 302 atatatatatatatatatatatatatatatata 334
|||||||||||||||||||||||||||||||||
Sbjct: 890 atatatatatatatatatatatatatatatata 922
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 302 atatatatatatatatatatatatatatatata 334
|||||||||||||||||||||||||||||||||
Sbjct: 892 atatatatatatatatatatatatatatatata 924
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 303 tatatatatatatatatatatatatatatata 334
||||||||||||||||||||||||||||||||
Sbjct: 885 tatatatatatatatatatatatatatatata 916
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 302 atatatatatatatatatatatatatatatat 333
||||||||||||||||||||||||||||||||
Sbjct: 894 atatatatatatatatatatatatatatatat 925
Score = 56.8 bits (29), Expect = 4e-12
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 302 atatatatatatatatatatatatatatatata 334
|||||||||||||||||||||||||||| ||||
Sbjct: 898 atatatatatatatatatatatatatatgtata 930
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 8
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_k03.g1 MSMg01no439_k03.g1 CHROMAT_FILE:
MSMg01no439_k03.g1 PHD_FILE: MSMg01no439_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:49 2005
(399 letters)
>mm_chr3_44254160_44254958
Length = 799
Score = 756 bits (391), Expect = 0.0
Identities = 397/399 (99%)
Strand = Plus / Plus
Query: 1 aggtataggccttgagggaggagaatgtagtgagaaaactcacatatcagagacttataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtataggccttgagggaggagaatgtagtgagaaaactcacatatcagagacttataa 260
Query: 61 aaaagcagggaacaaaccagattactgtgtcaaaatagaaaataaacaacctgaacacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagcagggaacaaaccagattactgtgtcaaaatagaaaataaacaacctgaacacag 320
Query: 121 cttgtggctttggtattaagaaaaaacaaacagcctgacaaatactgatgcagatgtttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgtggctttggtattaagaaaaaacaaacagcctgacaaatactgatgcagatgtttg 380
Query: 181 cagccaaccatttgagtgagcacaggaccccagtgaaggaattaggggaaggactgaagg 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 cagccaaccatttgagtgagcacaggaccccagtggaggaattaggggaaggactgaagg 440
Query: 241 aagtgaaggggtttgcaaccccataggaacaataaaatatcaattaaccatatcccccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgaaggggtttgcaaccccataggaacaataaaatatcaattaaccatatcccccag 500
Query: 301 agctcccagggactaaaccaccaaccaaagagtacacatggaggaacccatggctccagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctcccagggactaaaccaccaaccaaagagtacacatggaggaacccatggctccagc 560
Query: 361 tgcatatatagcagaggatggccttatctagcattgttg 399
||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 tgcatatgtagcagaggatggccttatctagcattgttg 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
