BAC Information

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BAC

Clone NameMSMg01-439O05
Chromosome3 (Build37)
Map Location 43,241,473 - 43,241,805
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039204, LOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439O05.T7 (MSMg01no439_o05.b1)MSMg01-439O05.TJ (MSMg01no439_o05.g1)
ACCAG530134AG530135
length755811
length of high quality
(start - end)
332 (70 - 401)70 (71 - 140)
definitionCHROMAT_FILE: MSMg01no439_o05.b1 PHD_FILE: MSMg01no439_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:08 2005CHROMAT_FILE: MSMg01no439_o05.g1 PHD_FILE: MSMg01no439_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCCATACCTTCAAGACAGGAATCTGGAGGGAGGAATTGAAGT
AGAAATTATGAATGAAGACTGGTAATTGGCCTGTTCACTTTTTTCTCCTT
ATGCAACCAAAGATCACATTCCTAGGATCTCTAGTGAACTGAAGGCTTCC
ATATCAAATATTAATTTTAAAAAGGCAAATAAACCTTGCCTGCGGCCAGG
CAGTGATGGTACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCTGGT
GAATTTCTGAGTTCATTTTTTCATGGTCTACAGAGTGATTTACAGGACAG
ACAGGGCTATCCAGAAAAACTTTCTGTCAAAAAACTACAACAACAAAAAA
CAAAACAAAATATAACAAAACAAAACAAAACAAAACAAAAAAACATTGAC
TATATTGCAATCTAATAGAAACTTTATCTCAATAGGTTTCCCTCTTCCCA
GATACATTTAGGCCCGCCTCCTGTCTGACCAAATATACCCCAGTACGCGT
ATCCCTCTTGCACAATTCCTCCTTACCTACAATACTATGGCCTTCTACCG
GTGACCCTCTCCTGCCCATATCCATCTCCCTGTATAGGCCCCCCCCCCCC
CCTTTTTTTTTTCCCCTTTCCCACTGTCAACACTATCTCTACATTCTGCG
CCCTTTATTTTTTCTTTCCCCCTCCTCCTAATCCGCCTCCCCTCTCTTAC
TTTTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCTGCAAAATTCTCAGAAGGTCTTTAAGCCTACAGCTT
TTATTTTATTCTTAGTGTTGTTTTTCTGTTGGTGTTGTTGCTGTTGTTCT
ANACACCCTTTCCTCTTCCCCTCCCCCCCCCCCCTTCCCTTCTCCCCCCC
CCCCCCCTTCCCCCCCCTCTCCCCCCTCCTTCCTTTCCTCTCCCCTTTTC
CCTCCCCTCCCCTCCCCCCCCCCCCCCCTTTCCCCCCCCTCTCCCCCCCC
CCCCGGCCGTTTTTCCTCTTTTCTCCGCCCCCGCGGGCCTCCCCCTCCCC
CCCCCCCTATTTCCCCCCCCCCCCTTCTCCTCCCCCCCCCCCCCCTCTCC
CCCCTTCCCCCTTTTTCTCTCTCCCCCCCCCCACATACAAACCCCCCCCC
CCCCTCCTCCCCCCCCTCCCCTTCCCTCATCTCACCCCTCTCCCCCCCCC
CCCCCTCTCTTCCTCCCCCCCACTCCCCTCTCCAACCCCCCTCCATCATT
ATCCCCAATCTTCTCTCCCCCCCCCCCCACTCATATTATATCACCCCCCA
CACCATCCCCCACCCACAAATTTACCTTCCATACTACCCCCTAACCCCCC
CACCCCCCCCCCCCCTTCTCCCCCCCCTCCTCTTCCCCCTCACCCCTTCC
CCCCCACACACATCATATTTTCCCCCCCCCTCATACCCACTCCCCCTCCC
ACACCTTCCTTAACCCCTCTATACCCCACTACCCTCCATCTCTACCCCCC
CCCACCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_o05.b1 MSMg01no439_o05.b1 CHROMAT_FILE:
MSMg01no439_o05.b1 PHD_FILE: MSMg01no439_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:08 2005
         (332 letters)



>mm_chr3_43241273_43242004
          Length = 732

 Score =  536 bits (277), Expect = e-157
 Identities = 318/339 (93%), Gaps = 13/339 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacaggaatctggagggaggaattgaagtagaaattatgaatgaagactggtaattgg 60
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aagacaggaatctcgagggaggaattgaagtagaaactatgaatgaagactggtaattgg 260

                                                                       
Query: 61  cctgttcacttttttctccttatgcaaccaaagatcacattcctaggatctctagtgaac 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgttcacttttttccccttatgcaaccaaagatcacattcctaggatctctagtgaac 320

                                                                       
Query: 121 tgaaggcttccatatcaaatattaattttaaaaaggcaaataaaccttgcctgcggccag 180
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagggcttccatatcaaatattaactttaaaaaggcaaataaaccttgcctgcggccag 380

                                                                       
Query: 181 gcagtgatggtacacgcctttaatcccagcacttgggaggcagaggctggtgaatttctg 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtgatggtacactcctttaatcccagcacttgggaggcagaggctggtgaatttctg 440

                                                                       
Query: 241 agttcatttttt-------catggtctacagagtgatttacaggacagacagggctatcc 293
           ||||||             ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 agttca------agaccagcatggtctacagagtgatttacaggacagccagggctatcc 494

                                                  
Query: 294 agaaaaactttctgtcaaaaaactacaacaacaaaaaac 332
           ||| |||||||||||||||||||||||||||||||||||
Sbjct: 495 agagaaactttctgtcaaaaaactacaacaacaaaaaac 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)