NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCTTTTACAGACCGATGGAAAAGGAAAACTAAAAGCCGCTTTCA
GTAAGTTAGCAAAAGAATAATTGTGGTTGAAATAACTTCTTCCTACAGCC
TTCATCCTTCATGCGAAAAGATAACATTGTATCTGTAAATAGCAGGTATA
TTAAAAACGGAAACATCCGAAGCTTGGGAAAGGAAGCTTATTCTTAAAAC
ATATTTGAACATAGCGATACTGTTATCATGGCCTGGCTAGCCTACTACCA
GCTGTCTGTATCAAAATCTAACCAGGAGGGAGAGAGCAATTGCAAGAGGA
GATACTTTTGTTCCAGCCCTAATTTGAGAGAATGGAATAGAGACCATATG
CCCATTTTTAAACGGGGAGGTGGTTCAAGGCCTCTTTATGCTACAATAGG
CGGAGTAATTCTTGCTTAAAGCTCTCTGCTCTCCATGAGGAGTTCCTTGA
AGGGCAGGCATGGTCTGATTCTTTCCCCCCAGTTTCCAGGCCCTTGTACA
GTCTGAATCTCTACTAATATACTAAACAGTAAAGGAAAGCTTGTCCCTCC
CATTGAAGGCCCAAGTAAAAAGGGTTAGTTTATAAGTGAGAAATGGGAAA
CGGGGAATCCTTTTCAGGCCTTTGGTAACTTCCCGGGTCCCCCCATCGTT
GGGATTTTTGTTTTTTTATATATGTGCCCTCCCTCCCCTCTTAATATTTT
T

ATATAGTGGGAGGCCTGGNGGCCGCCTGGTACTAGAATTTAGGTGAACTA
TAGAAGTACCAGAGCAATTCCTTGATCCACTTAGATTTGACTATTGAGAA
GGGTGTTGTTTCCCTAATTTCAAAAGGGTATACTCAACAAAACTGGAAAA
CCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTAA
ATCAGGATCAGGTTAATGATCAAAACAGTCTTATATCCCCTAAAGAAATA
GAAGTAGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGG
GTTTAGTGCTTAGCTCCATCAGACATTCAGAGAAGATCTAATTCCAGTGC
TGCACATAATACAAGCAGAAGGTACTCTACGCAATTCATTCTATGAAGCC
ACAATTACTCTGATACCTAAACCACAAAAAGGCCCAACAAAGATAGAGAA
CTTCAGACCAATTTCCCTTATGAATATCGATGCTAAAATACTCAATAAAA
TTCTCACTAACCGAACCCAAGAACACATCACCACGGTCATCCATCCTGAC
CAAGCATGCCTCATTCCAGGTATGCAGGTATGGTTTACCATACGGAAATC
TATCTTAGCATTTCTTTTTTTTAACCTTCCCCCATGATTTTTTCTTTTTG
TCCCTTTTCCTTTTACGTCAATATTCTTTTTTTTCCCTTTTTAATCCTCC
TCTCCTTATTTATCCCCCCCACTAACTT

Query= MSMg01no439_o07.b1 MSMg01no439_o07.b1 CHROMAT_FILE:
MSMg01no439_o07.b1 PHD_FILE: MSMg01no439_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:08 2005
         (480 letters)



>mm_chr3_132312053_132312932
          Length = 880

 Score =  837 bits (433), Expect = 0.0
 Identities = 466/477 (97%), Gaps = 2/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcttt-tacagaccgatggaaaaggaaaactaaaagccgctttcagtaagtta 63
           ||||||||||||  | |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 680 gaattcctctttgaaaagaccgatggaaaaggcaaactaaaagctgctttcagtaagtta 621

                                                                       
Query: 64  gcaaaagaataattgtggttgaaataacttcttcctacagccttcatccttcatgcgaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcaaaagaataattgtggttgaaataacttcttcctacagccttcatccttcatgcgaaa 561

                                                                       
Query: 124 agataacattgtatctgtaaatagcaggtatattaaaaacggaaacatccgaagcttggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agataacattgtatctgtaaatagcaggtatattaaaaacggaaacatccgaagcttggg 501

                                                                       
Query: 184 aaaggaagcttattcttaaaacatatttgaacatagcgatactgttatcatggcctggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaggaagcttattcttaaaacatatttgaacatagcgatactgttatcatggcctggct 441

                                                                       
Query: 244 agcctactaccagctgtctgtatcaaaatctaaccaggagggagagagcaattgcaagag 303
           |||||||||| ||||||||||||||||| | |||  ||||||||||||||||||||||||
Sbjct: 440 agcctactactagctgtctgtatcaaaa-caaacggggagggagagagcaattgcaagag 382

                                                                       
Query: 304 gagatacttttgttccagccctaatttgagagaatggaatagagaccatatgcccatttt 363
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gagatacttttgttccagccctaatttgagaaaatggaatagagaccatatgcccatttt 322

                                                                       
Query: 364 taaacggggaggtggttcaaggcctctttatgctacaataggcggagtaattcttgctta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacggggaggtggttcaaggcctctttatgctacaataggcggagtaattcttgctta 262

                                                                    
Query: 424 aagctctctgctctccatgaggagttccttgaagggcaggcatggtctgattctttc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctctctgctctccatgaggagttccttgaagggcaggcatggtctgattctttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)