Query= MSMg01no439_o13.b1 MSMg01no439_o13.b1 CHROMAT_FILE:
MSMg01no439_o13.b1 PHD_FILE: MSMg01no439_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:09 2005
(244 letters)
>mm_chr3_104416181_104416824
Length = 644
Score = 422 bits (218), Expect = e-122
Identities = 241/256 (94%), Gaps = 13/256 (5%)
Strand = Plus / Minus
Query: 1 ctgcatgtatatgctgtgacatacatgtatcttcacacactcccacgtgcatgtgagtgc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgcatgtatatgctgcgacatacatgtatcttcacacactcccacgtgcatgtgagtgc 242
Query: 61 acacacatacacaccttgcctcttcctgttctcaaagctgctgtgtgctgtgtgtgtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acacacatacacaccttgcctcttcctgttctcaaagctgctgtgtgctgtgtgtgtgtg 182
Query: 121 tgtgtgt------------gtgtgtgtgtgtatactgtgcatattatatgtgggtgtaaa 168
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtgtgtatgtgtgtgtgtgtgtgtgtgtgtatactgtgcatattatatgtgggtgtaaa 122
Query: 169 tgtaaaaaattctaattgattgcttgtatgctctgcaatcaacatgaagcattaggacaa 228
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtaaaaaac-ctaattgattgcttgtatgctctgcaatcaacatgaagcattaggacaa 63
Query: 229 agacacaattcagcca 244
||||||||||||||||
Sbjct: 62 agacacaattcagcca 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no439_o13.g1 MSMg01no439_o13.g1 CHROMAT_FILE:
MSMg01no439_o13.g1 PHD_FILE: MSMg01no439_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:09 2005
(238 letters)
>mm_chr3_104250827_104251460
Length = 634
Score = 387 bits (200), Expect = e-112
Identities = 227/240 (94%), Gaps = 8/240 (3%)
Strand = Plus / Plus
Query: 1 ggagctcaaggtggaaggtggagactgacacccaaggctgtcctgactgtcacatatgca 60
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 ggagctcaaggtggaaggtggagactgacacccaaggctgtcctg----tcacgtatgca 256
Query: 61 ccatagcacatacacccatatccatgctctctccttgatataccacacacacacacacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccatagcacatacacccatatccatgctctctccttgatataccacacacacacacacac 316
Query: 121 acacacacacacacacacacataca----tgggtgggggtgggatgaaaataaaaacagc 176
||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||
Sbjct: 317 acacacacacacacacacacacacacacatgggtggggatgagatgaaaataaaaacagc 376
Query: 177 aaaccaaaaactaacagctggtcgtggtggtacaagactttaatctcagcactcaaggca 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 377 aaaccaaaaactaacagctggtcgtggtggtacaagactttaatctcagcactcgaggca 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 634
Length adjustment: 9
Effective length of query: 229
Effective length of database: 625
Effective search space: 143125
Effective search space used: 143125
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
