Query= MSMg01no439_p02.b1 MSMg01no439_p02.b1 CHROMAT_FILE:
MSMg01no439_p02.b1 PHD_FILE: MSMg01no439_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:12 2005
(520 letters)
>mm_chr3_65966734_65967653
Length = 920
Score = 973 bits (503), Expect = 0.0
Identities = 512/515 (99%), Gaps = 2/515 (0%)
Strand = Plus / Minus
Query: 7 ggaaatctctctaattgcctgtccacaattgctcaaaatcaataattcctccactctcac 66
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ggaattctctctaattgcctgtccacaattgctcaaaatcaataattcctccactctcac 661
Query: 67 acccccacacccataccaccctg-cccccccccacatacacatacatgtaaagatctaat 125
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 660 acccccacacccataccaccctgccccccccccacatacacatacatgtaaagatctaat 601
Query: 126 gcaaatcagatcaactgtagcagcatttcctttcagtgaaactgaactgtggacatgacc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gcaaatcagatcaactgtagcagcatttcctttcagtgaaactgaactgtggacatgacc 541
Query: 186 acattataatccccatgtaactgagcctttcatggctccacttcaacccacagaacaggc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acattataatccccatgtaactgagcctttcatggctccacttcaacccacagaacaggc 481
Query: 246 ttcccaggacccagcggtacctctgcttttttatactctggcagcattaggcattgacga 305
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 480 ttcccaggacccagcggtacctctgctttttta-actctggcagcattaggcattgacga 422
Query: 306 tccccaacaggcaatgggaccctggtgtggatttagcccattgggttctcctccttctct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tccccaacaggcaatgggaccctggtgtggatttagcccattgggttctcctccttctct 362
Query: 366 aacaagcttaactacagcaaagtatgtcctggacatgggatggaaagccaagatcataaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aacaagcttaactacagcaaagtatgtcctggacatgggatggaaagccaagatcataaa 302
Query: 426 ggtgaactaatacagtttttctttgatttaagagcccaggaacagagcttgcccaactct 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtgaactaatacagtttttctttgatttaagagcccaggaacagagcttgcccaactct 242
Query: 486 ctgttcctaccagcttatagtctcatcacccagct 520
|||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgttcctaccagcttatagtctcatcacccagct 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_p02.g1 MSMg01no439_p02.g1 CHROMAT_FILE:
MSMg01no439_p02.g1 PHD_FILE: MSMg01no439_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:12 2005
(409 letters)
>mm_chr3_65780114_65780922
Length = 809
Score = 698 bits (361), Expect = 0.0
Identities = 401/419 (95%), Gaps = 10/419 (2%)
Strand = Plus / Plus
Query: 1 cactaggagaagggtcctaagggttgacaagagtcagggacagtcccactcctgctgtta 60
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 191 cactaggagaagggtcctaagggccgacaagagtcagggacagtcccactcccgctgtta 250
Query: 61 acaatcataacatttatatagag-acctaactcagacccatacaggcttcctgattgtcg 119
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 251 acaatcataacatttatacagaggacctaactcagacccatacaggcttcctgattgtcg 310
Query: 120 ctccagtctctgagcctcaacgagccctgtttagttgatctgtgggctgtgttctcatgg 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctccagtctctgagcctcaacaagccctgtttagttgatctgtgggctgtgttctcatgg 370
Query: 180 tgtccttgacccctctggggcctacaatccttcctccccttcctcagggctctctgagct 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 371 tgtccttgacccctctggggcctacaatccttcctcctcttcctcagggctctctgagct 430
Query: 240 cccacaggccactgttttttgaggagg------tttttgttgttgctgttgttg---ttg 290
||||||||||||||||||||||||||| |||||||||||| |||||||| |||
Sbjct: 431 cccacaggccactgttttttgaggagggttttttttttgttgttgttgttgttgctgttg 490
Query: 291 ttgttttgagcagggataaaaagttcacatgcatatggaggctggggctttagctcagtt 350
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttgttttgagcagggacaaaaagttcacatgcatatggaggctggggctttagctcagtt 550
Query: 351 aaggcctcccttaacatgggtgaagcctttgacagagatgcttcccactttctactgtg 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaggcctcccttaacatgggtgaagcctttgacagagatgcttcccactttctactgtg 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
