BAC Information

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BAC

Clone NameMSMg01-439P18
Chromosome3 (Build37)
Map Location 77,707,776 - 77,708,144
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439P18.T7 (MSMg01no439_p18.b1)MSMg01-439P18.TJ (MSMg01no439_p18.g1)
ACCAG530208AG530209
length750754
length of high quality
(start - end)		520 (43 - 562)370 (71 - 440)
definitionCHROMAT_FILE: MSMg01no439_p18.b1 PHD_FILE: MSMg01no439_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:15 2005CHROMAT_FILE: MSMg01no439_p18.g1 PHD_FILE: MSMg01no439_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACT
TGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATA
GTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGAT
AAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAA
TGGCCTTTCTCTACACAAAGAATAAACAGGTTGAGAAAGAAATTAGGGAA
ACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGAC
TCTAATTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTCTGA
AGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCA
TGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGGCCAAAGGAAT
CTAACGATTCCATGCATCCCCCATCCAAAATTCTATTCCATTCTTCCCGG
AATATAAAAGAAGAATTTGGGATTTCTCTTGGGAAAACACAAAATCTATG


CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTATGTGATTTCATTAATGTTTACTATAA
AATAGGGTCTTCATTCATAAGCTGAGAACAGTGAACCAGGGATATAGGTA
ATACAGAGGTATATTGGGGAAGAACTGATAAGATAATGAATAGGGCTATA
AAAACATGAGAAAGCAAGGATTGGAGAAATAGAAATCATTGCCATGTATA
TAATGTTGACATTAATCTCATTAATCTGAAATGAGACTTATCTCAGGGAT
TAGATAATAGTAGCTATTGGGTTAATAACGGGGATTAGCGTTTACAGACA
GCCCTTTCCAAAAAGTCTGCCTCTAACCAGCTGACCAAAGCAGACTTCAC
ATGTCTAGGTATTATTGCAGAATGATTTCTGGAGGAAGATGTGGTGAGGT
ACAGTCCTACTGCAGCCTATGGAGTCATTATTACCATTTGTATACAATGG
AGTTGATGCATGATGGTGTCATACCACCACATCATTCTATCTAGCGCTCT
GTATATTGCGCTTTTTCTACCCCGTCACTCTTCTTCCTTTTTTTTCCCCT
CCTTGTTATAAACCATCTCTTACCTCATTTTGAGTTTCTATAAATCTTTT
ATGGCACCACCACTGATCCCATGGCCCCATTAACGTTCTTTCTCATGGCC
CCCCCCCTCCCTTCTTCCTCTCCTTCTGCCATTTTTTTTCCCCCTTTTTA
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_p18.g1 MSMg01no439_p18.g1 CHROMAT_FILE:
MSMg01no439_p18.g1 PHD_FILE: MSMg01no439_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:15 2005
         (370 letters)



>mm_chr3_77707576_77708344
          Length = 769

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%), Gaps = 1/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtgatttcattaatgtttactataaaatagggtcttcattcataagctgagaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 actatgtgatttcattaatgtttactataaaatagggtcttcattcataagctgagaaca 510

                                                                       
Query: 61  gtgaaccagggatataggtaatacagaggtatattggggaagaactgataagataatgaa 120
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 509 gtgaaacagggatataggtaatacagaggtatatt-gggaagaactgataagataatgaa 451

                                                                       
Query: 121 tagggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tagggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtata 391

                                                                       
Query: 181 taatgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 taatgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatag 331

                                                                       
Query: 241 tagctattgggttaataacggggattagcgtttacagacagccctttccaaaaagtctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tagctattgggttaataacggggattagcgtttacagacagccctttccaaaaagtctgc 271

                                                                       
Query: 301 ctctaaccagctgaccaaagcagacttcacatgtctaggtattattgcagaatgatttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctctaaccagctgaccaaagcagacttcacatgtctaggtattattgcagaatgatttct 211

                     
Query: 361 ggaggaagat 370
           ||||||||||
Sbjct: 210 ggaggaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 769
Length adjustment: 9
Effective length of query: 361
Effective length of database: 760
Effective search space:   274360
Effective search space used:   274360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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