BAC Information

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BAC

Clone NameMSMg01-440D01
Chromosome3 (Build37)
Map Location 40,478,379 - 40,479,012
singlet/doubletsinglet
Overlap geneIntu
Upstream geneLOC100041443, LOC100041458, LOC100040882
Downstream geneSlc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440D01.T7 (MSMg01no440_d01.b1)MSMg01-440D01.TJ (MSMg01no440_d01.g1)
ACCAG530365AG530366
length7501,588
length of high quality
(start - end)		636 (52 - 687)---
definitionCHROMAT_FILE: MSMg01no440_d01.b1 PHD_FILE: MSMg01no440_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:32 2005CHROMAT_FILE: MSMg01no440_d01.g1 PHD_FILE: MSMg01no440_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCATGGATTCTATTTAGAAGTTTTAATTTTGTATGATA
TTTTAACTTTTCCTGTGAGAAAAATCGATGTTGCCTAAGTCTCAGCAGGA
AGTGAGGCTCTGGCTGCTATCTCTGCTTCTGGACTGTCAGCACACGGGGG
CATCTGCTTGGAGAGTCATTGTTTTATTTCTGTTAAAGCTCTCTGTTTCT
TGGAGATAGGAAACTTTTCAGCATTTTGTAAATAATCCTGTAAATTAGTA
TTTTCTGTAATTTAAAATAAACATGCCTTGTCATGTAGATTAATTTGTGC
TAGCTAAGCCCTCTCAGACCTAAGCCAGGGAGTTTATAATCCTGGGATAC
TTTTCCTTCCTAGTTGTACTTCTTCAGTCTTGGATTCACACTTTGTAAAT
TAAGCAAATATTTAATAACATCACAAAAAATGATGATTCTCTTTTAAGGT
TCATTATGAAAGAAATTATATTGACTCCTATGGGTTTTGTGTGGGGATTG
AAGCTTAAAGCACTATTTGAAATAAGTAATTTCAATTAATTGTGTAGAGT
TTGGTCTGTGTAGTCTCTAAACCGACTTTCAAATGTAGCATTTGAAATGC
TTGTTGAAGTGTTAACATACCAGGCATAACTCTGTCCGTGATTGAATGAA
ACTCTGACTAAAGCTGAGGCTGAAAGGACTCCTATTTTGTTCTTAATACN


CTCATTCATTCATGATAATCTCTTTGTGCGGNCCGCTGTCTTCTCGGCGA
GTGAGNGTGNGCGTCGTGTGGTGTTCTACTCTCTAGTATGTGGATGTNAN
AGGGCATGTNTCTGTGTGTAGAGTAGTGGAGGTCTCTGCATGAGAGTGGA
GTTGCNTTGGTGAGCACGATGTGCACAATGAAGACCACTGAGACATAGAG
GAATGATCGACTAGGAGAGATGCACGACCGATGACATATACGATGATGNA
GTAGCTGTTACGCCAACGTAGCTGCGTAGTGGCCGTAGTACTAGAGCGAC
CTCGCCCTATCGNTCTGCAGACTGAGCAGCCTACGGTGGGCGCACTGTTA
CTCTGTTAGCCTACAAGTAGTACCTGATGTCGCGTGGCAGTCTGTGATNT
GCGAGTACTCTCTCTCACCGCGCTCTCTAACCGCCTTTCTTTCTCTCTGT
CCGTCCCTTCTGCGATCCTCGGCGTCTAGCGTCAGCGTATACTTGACCAT
GATGTCTCTTCTACTACAACGTGTGTCCTCTCCNCGCTCCTCACTCTCTG
CTCCACTTAGGCCTGTTCAGTCATGTACTCTCCTGCGTTCTCCCTGCGAT
GCGTGGCGNACACTGTAGGGCGGGCTCTCAAGNAGCTGTGTGNCACNTCG
CGTAGCGTACGCTGCGCGGGCGGTGTCGGTCGTATGCTGTGCTGAGTGGA
GCGTGCTCTGATGTTGCGTAGATGTGAGAATCAGCATNGTACGGCGATGA
TATACGATCGTTGAAGTAGCTGCATCTTTAGTGTGGTGCGAACAGTCCAG
TACCTTTGTGTATGTTCTTCCTCACTCGATACCAGAGGCTAGTACAACCT
CCGTCCTTGCGTGANTCCACGCCACCGACGTGCGCTATGCTGTCGTGTCT
CAACTCTCTACCACGGTTCTCTCCCTCCCTCATCACTAGCNTACGTGTCC
CCATACCACTGGGCTGTGCGCCGACAGACTTACTCTATCTCACACGTGCT
GCGACGCGGGTCTGCGCCGCGGATACATACAACACTCTGTGTGAACCGCC
NTATTTCTCGTCGACCATATGTGCGCCGCGTCGGCGTCGTAGAAGCTCCT
GTGCATCTACGCGCGCGACCCAGCGATACGCACTGGTAGTGCATGTGCTC
GACCAAAGGCTGTATATATATTAGCGCGCTGGTTAGGTCTCGTTATCAAC
NACACAGAAATGTGACTGAANTAGATGAGATGGACTACTCACACACATCG
GTGTCTGCTGCTCCCTGTATCTGTGTATGGTCTACTACGTCATCCGTGGT
CGGTGTCGAGANCATCGACTCGTCGCTATATGTCAGTGCTGTGCGTTCGC
GATGCGTGTAGTATATTGNATGAATCCGCGTCTCGCAGCGGAGCGCGCGT
CATGATCATCCTCTAACCTACAATGTCGTCGTGTCATGGAGCGTGGGAGA
AGTATGTTGTNGTCAATCATAACTCGCACATACTGTAGCTGTCCATTACG
CACGCTCTACCTGTACACGTCATCATGTCTCATCACCGGANGCAACGCTA
GCTGCTGACGAGCGCAGCGTCGGCGACGTGCGTCGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_d01.b1 MSMg01no440_d01.b1 CHROMAT_FILE:
MSMg01no440_d01.b1 PHD_FILE: MSMg01no440_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:32 2005
         (636 letters)



>mm_chr3_40478177_40479212
          Length = 1036

 Score = 1218 bits (630), Expect = 0.0
 Identities = 633/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattcttcatggattctatttagaagttttaattttgtatgatattttaacttttcc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattcttcatggattctatttagaagttttaattttgtatgatattttaacttttcc 262

                                                                       
Query: 63  tgtgagaaaaatcgatgttgcctaagtctcagcaggaagtgaggctctggctgctatctc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtgagaaaaatcgatgttgcctaagtctcagcaggaagtgaggctctggctgctatctc 322

                                                                       
Query: 123 tgcttctggactgtcagcacacgggggcatctgcttggagagtcattgttttatttctgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgcttctggactgtcagcacacgggggcatctgcttggagagtcattgttttatttctgt 382

                                                                       
Query: 183 taaagctctctgtttcttggagataggaaacttttcagcattttgtaaataatcctgtaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taaagctctctgtttcttggagataggaaacttttcagcattttgtaaataatcctgtaa 442

                                                                       
Query: 243 attagtattttctgtaatttaaaataaacatgccttgtcatgtagattaatttgtgctag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 attagtattttctgtaatttaaaataaacatgccttgtcatgtagattaatttgtgctag 502

                                                                       
Query: 303 ctaagccctctcagacctaagccagggagtttataatcctgggatacttttccttcctag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctaagccctctcagacctaagccagggagtttataatcctgggatacttttccttcctag 562

                                                                       
Query: 363 ttgtacttcttcagtcttggattcacactttgtaaattaagcaaatatttaataacatca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttgtacttcttcagtcttggattcacactttgtaaattaagcaaatatttaataacatca 622

                                                                       
Query: 423 caaaaaatgatgattctcttttaaggttcattatgaaagaaattatattgactcctatgg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 caaaaaatgatgattctcttttaaggttcattatgaaagaaattatattgactcctatgg 682

                                                                       
Query: 483 gttttgtgtggggattgaagcttaaagcactatttgaaataagtaatttcaattaattgt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gttttgtgtggggattgaagcttaaagcactatttgaaataagtaatttcaattaattgt 742

                                                                       
Query: 543 gtagagtttggtctgtgtagtctctaaaccgactttcaaatgtagcatttgaaatgcttg 602
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 743 gtagagtttggtctgtgtagtctctaaaccgactttcaagtgtagcatttgaaatgcttg 802

                                             
Query: 603 ttgaagtgttaacataccaggcataactctgtcc 636
           ||||||||||||||||||||||||||||||||||
Sbjct: 803 ttgaagtgttaacataccaggcataactctgtcc 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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