NGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
GCGGAATTCCACATCTTGTTCTGCAGGTAGCAATGAGGAGACTCAAATTC
CACTCTAGGTGGAGCTTGAGCCTAGAGTGCTCAAAACTTGCTCTATCTAC
TCCAACAAAGCCACATTTTTTTTTAAAGCCACATTTCTTAATAGTGCCAC
TCTCCATGGGCCAAGCATTCTACTACATGAGTCTATGAGAGGCAAACCTA
TTCAAACCACCATATACAGCAAGCAATTTTTTATTGAACTCCTTCATAAG
CTCCTGGGGTCCCCTTTATACAGAATAAATCTCATTCATAATTAGTCCAT
ATCCAGGAACTCTTAAAGGCCCTACCTCTCATGCATACATCACATAGAGG
ATTTCAACATGAGAATTTTTCAGAATATAAACACTCCTTGTATAGAAAGG
TTTAGTAGAAATATTTGAGTGCATGAACGTATAAAATGTTGTCCTCTACA
TAATTAAGTATTCAGGCTGAATACTTCATAAGGAAAGGCTAGTTTATTGA
GATAACAGTTTTGAATGCTAAAAGTTTTAGAGATGGTTGCCTCATTAGNT
AAGATATTATTAATCATCACTTGGGCTTTGTCAAACCATGGCAAGTGCCT
TCACGATTAGTGAGTGTCAGGGGAAAAACTCATGGAAAAACATGGAGTGA
AAGGTTAAAAAAAGGGTCATTTTTTACTCCCTGGATAAATGATCCCCTGT

NTTAGAGGCACCCCCCNCNCCCCNNNNCCCCNNNCCGGANCGNNNCGCCC
CCGGGCCGGGCGCNNNNNNNCCNNNNNCCCCCCCCCCCCNNCCNCCCCCC
CCCCNNNNNNNNNCNNCNCCCCCCCNNCCGCCCNCNNNNCCNNNNNNCCC
GCCCNNNNNNNNNNNNNNNNNNNCCGCCNAAATGTNNACTAANNNGNCGN
NNTTGAAGNNNCCCGTTGGGNNCCGCGGNCCCCGGNNCCCCCTGGGGNNN
CTCGGCTCCCCCGCCAAAACAATTATTTTTAAGGGGGTTTGGGNAACCCC
ACCCCTTAAATTTAANCCAAAAAGAGGNAAAATTTCTTTTGCCCCGCCCG
NNAAAAAAATNNTTCCCCCTNNTTTTTTTTTAATTTGGGGGGNNAAAGGN
AAAAAAACCTCTTTTAAAAAATTTTTGGCCAAACCNCAAAAACCCAAAAA
GGGGAAAATGGGGCCCCTTCAAAAAATTTTTTTCCCAACCCCCCCAAAGG
NCCCAAAAAAGGGGGGGCCCACATTTTCCCCTTTTTTTTTAAAAATTTTT
TCCCCACAAAGGAGGGGGGCGGGGGGAAACCACTTAAAANNNCNCCCTTG
GGAAAAAACCCTTTTTTAAACACCCAAAGGGNNCTAAAAAATTTTTTTGG
GAGAAAAACCNAGAAAAATTTTTCGTTTTTGTGGGGGTGTNNCAAACGCG
TGTTATAGAAGTTGTGTCTGCANTAANNTGTATTCTNANNCNNTCCCCCC
ACACNNNCAGGGACTTGGAGAAGTNNTCNNNGGGTAGAGGGGGGGGGAGG
GGACATAATATTTTGACAATAACACTGAACAACACTTGGCACNCNNCNCC
NCCCNCCCCCCAGCCCCCCCCCCNCCCCNTAGNNTTTNNNNACCANNNNN
NNNNTNTCCCTNNCCTCTCCCCCTTNTTTGGTGAGTGGGGTGGTATAGAG
GGAGCTGAGAGAGGGTGTTCNCCCAGTTCNCNCCCG

Query= MSMg01no440_d04.b1 MSMg01no440_d04.b1 CHROMAT_FILE:
MSMg01no440_d04.b1 PHD_FILE: MSMg01no440_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:33 2005
         (534 letters)



>mm_chr3_59722902_59723835
          Length = 934

 Score =  953 bits (493), Expect = 0.0
 Identities = 521/531 (98%), Gaps = 2/531 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccacatcttgttctgcaggtagcaatgaggagactcaaattccactctaggtgga 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccacatcttgatctgcaggtagcaatgaggagactcaaattccactctaggtgga 265

                                                                       
Query: 64  gcttgagcctagagtgctcaaaacttgctctatctactccaacaaagccacatttttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 266 gcttgagcctagagtgctcaaaacttgctctatctactccaacaaagccaca--tttttt 323

                                                                       
Query: 124 taaagccacatttcttaatagtgccactctccatgggccaagcattctactacatgagtc 183
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 taaaggcacatttcttaatagtgccactctccatgggccaagcattctactacattagtc 383

                                                                       
Query: 184 tatgagaggcaaacctattcaaaccaccatatacagcaagcaattttttattgaactcct 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 384 tatgagaggcaaacatattcaaaccaccatatacagcaagcaattttttattgaactccc 443

                                                                       
Query: 244 tcataagctcctggggtcccctttatacagaataaatctcattcataattagtccatatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcataagctcctggggtcccctttatacagaataaatctcattcataattagtccatatc 503

                                                                       
Query: 304 caggaactcttaaaggccctacctctcatgcatacatcacatagaggatttcaacatgag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caggaactcttaaaggccctacctctcatgcatacatcacatagaggatttcaacatgag 563

                                                                       
Query: 364 aatttttcagaatataaacactccttgtatagaaaggtttagtagaaatatttgagtgca 423
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatttttcaggatataaacactccttgtatagaaaggtttagtagaaatatttgagtgca 623

                                                                       
Query: 424 tgaacgtataaaatgttgtcctctacataattaagtattcaggctgaatacttcataagg 483
           ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 624 tgaacatataaaatgttgtcctctacataattaagtgttcaggctgaatacttcataagg 683

                                                              
Query: 484 aaaggctagtttattgagataacagttttgaatgctaaaagttttagagat 534
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaggctagtttattgagataacagttttgaatgctaaaagttttagagat 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)