BAC Information

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BAC

Clone NameMSMg01-440F22
Chromosome3 (Build37)
Map Location 80,201,439 - 80,201,827
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440F22.T7 (MSMg01no440_f22.b1)MSMg01-440F22.TJ (MSMg01no440_f22.g1)
ACCAG530503AG530504
length799780
length of high quality
(start - end)
321 (51 - 371)393 (80 - 472)
definitionCHROMAT_FILE: MSMg01no440_f22.b1 PHD_FILE: MSMg01no440_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:48 2005CHROMAT_FILE: MSMg01no440_f22.g1 PHD_FILE: MSMg01no440_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGATTTCTCACTACTTTTAACATGAAAGGGTTTTGTATT
TTGTCAAGTGCTTTTCCTGCATCTAAGGAGATGATTATGTGATTTTTTTT
CTTTGAGTTTGTTTATATAGTGGATTGTGTTAATGGATTTTCATATATTA
AACCAACCTTTCATCCCTCAGATGAAGCCTACTTGATCATGCTGAATGAT
GGTTTTGATCATGGTGTTCTTGGATTCGGTTTGCAAGAATTTTATTGAGT
ATTTTTGCATCGATAGTCATAAGCAAGTTTTTTCTGAAGTTCCCCTTTTT
CGTTGGGTCCTTGTGTGGTTTATGCTCCTATTTTATGGATTAGTTTGAGG
AAAATTGGTATCATGTCTTCTCCCCCCCCTCGCAACAACTACTTCACGCA
AACCTCCTAGACCAGGGCCTACCTTCGGCGGCACCGTTATATCGACTTCC
ATCTCTCTTCTCCCCCTATAACTTTCCTATTTTCTTTCTCTTCCACCCCC
TCCCTTTTTTCTTTCTCCCACTCCCTCCCCCCCTCCCCTTTCCACCCTAC
TTTCACCCTCCCTACCTCTCCCCGCCTTTCTCATCTCCACCTCTCCCTCC
CTCTCTCTCTTATCTTCCATTTCCCCACCTTGACCCTCTTTTCTTCTCCT
CCTACCCCCTCTATCTACCAACTCCCTTCGTCTATTTATCTCCCCTTTCG
CAACCATCTCTCATATTCACCACCATCCCTCTCGTCTGCTATCTACACG
NNNNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTAAAGGAGTAGGTGGG
TTGGGGAACGGAAGACGGGGGCAGTATAGGGGATTTTTGGAGAGGAAACT
AGGAAAGGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAC
AAAGAAAAAATATTTCTTAGAACTCACAACCAGATATAAAATTTTCTATC
AATTCTCATAATGGTAAAAATTTTGGCTATTGAATTAATTTTTAGTCTTT
GTACTTTTTATTATTTTTTTCTTGCAATGGGTGTGTTTCAATTAAATAAC
AAACATTCTCATAATGTTTACCACAATTTTCTTATTAACCCTTTATCCCC
AGTTTCTAAAATGTAAGCATTTTTGTATCCCCTCAAGATAAATGTGTCCT
TTTTAGAGTAACTTTTTCCTGTGAATAAGCATTGGCATACCAAATTGTAA
ATTTATTTTTATTTCAGTCAGAAATTGCGTGCCTTTCTTACCATGCCCTA
AGGTGTTTTTCACCTATAAACTTAAATTATTTCCCAAAAGGGGCCTATCC
TTAACCAAAAAAAAAAAGTCTTTACAACCCCCAGGGGCCCAATGGGAATT
TATTCCCAAAACCCCCCCAAGGGCTAAAATTTTTCCTAATTTTTTTTTTC
TTACCCCCCCGGGCGAAAAACCTTATCCTGTTGTTGGGCCCCCCCAAAAA
TAAAACACTTCCTTCATTTTAAATAACGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_f22.g1 MSMg01no440_f22.g1 CHROMAT_FILE:
MSMg01no440_f22.g1 PHD_FILE: MSMg01no440_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:48 2005
         (393 letters)



>mm_chr3_80201110_80201902
          Length = 793

 Score =  665 bits (344), Expect = 0.0
 Identities = 380/394 (96%), Gaps = 6/394 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctaaaggagtaggtgggttggggaacggaagac-gggggcagtataggggattttt 59
           |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct: 718 ttttctaaaggagtaggtgggttggggagcgggagacagggggcagtataggggattttt 659

                                                                       
Query: 60  ggagaggaaactaggaaaggggatagcatttgaaatgtaaatgaagaaaatatctaataa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 658 ggagaggaaactaggaaaggggatagcatttgaaatgtaaatgaagaaaatatctaat-- 601

                                                                       
Query: 120 acaaagaaaaaatatttcttagaactcacaaccagatataaaattttctatcaattctca 179
             |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 600 --aaag-aaaaatatttcttagaactcacaaccagatataaacttttctatcaattctca 544

                                                                       
Query: 180 taatggtaaaaattttggctattgaattaatttttagtctttgtactttttattattttt 239
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 543 taatggtaaaaattttggctattgaattaatttttagtttttgtactttttatgattttt 484

                                                                       
Query: 240 ttcttgcaatgggtgtgtttcaattaaataacaaacattctcataatgtttaccacaatt 299
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 483 ttcttgcaatgggtgtgtttcaattaaatgccaaacattctcataatgtttaccacaatt 424

                                                                       
Query: 300 ttcttattaaccctttatccccagtttctaaaatgtaagcatttttgtatcccctcaaga 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 423 ttcttattaaccctttatccccagtttctaaaatgtaagcatatttgtatcccctcaaga 364

                                             
Query: 360 taaatgtgtcctttttagagtaactttttcctgt 393
           ||||||||||||||||||||||||||||||||||
Sbjct: 363 taaatgtgtcctttttagagtaactttttcctgt 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)