CCCCNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATATAATATTGCCTGTACCTTCCTAGGATGTATAGG
TATAGGGTCTTCTATTGGGGCATAGGTACTGTGATGGTTTGTATATCCTT
GGACCAGGGAGTGGCACCATCTGAAAGTGTGGCCTTGTTGGAATAGGTAT
GACCTGGTTCAATGGGTGTGTCACTGTGGGTGTGAGTATAAGGTCCTCAC
CCTAGTTGCCTGGAAGTCAGTCTTCCACTAGCAGCCTTTGGATGAAGACA
TAGAACTCTCAGCTCCTCCTGCGCCATGCCTGTCTGGATACTGCCATGAT
ACCACCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCA
AATAAATGTTGTTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCAC
AGCAGTAAAACCCTAACTAAGACAGGTACTTTCTTAGTATAAGAATTATA
TTGTAACAAAATATTTTGACCAAAAGCAAATTAGGAGGATAGGATTAATT
TTATCTTANAACTCTCAGTTTACACTCCCTCCTGAATGAATTCAGTCCAG
AAATTCAAGACAGGAATCCTGTAAGGTAGGAATTGTAATTAAAATTTATT
GATGAAGACCTGCCAATTGGTCCTGTTTCCTTTTTTTTCTCCTCTATGCA
ACCCAAGATTACTTTCCCCAGAGATCTCTATGCGGATTTGATTCGCCCCT
CCTTCTAAN

NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATAAATGAATTGAGAC
CTTTGAATAAATTCATTGCTTCAAAGTAATATTCTTGTTTAAATGAAAGT
CTTTGTAGAATATCAGACAAGATGGTAGATCAGACAATTTTTAACTCAAC
TGATGATAATTTTCATAGATCATTATATGCAGAAAAGACCAGTTCACATT
TAACACTCCTATGCTAGAGACAAAGTTCTGCATATTACACAAGTGATCTT
GCCCCACATAGACAGTCAATAAGAAACTCTTAGAGCACAAAATTCATTTT
GAGTATTCACTGCCAATCTCTATTTTGGTAACAGAGCACATTCAATGGTA
GATATAACAAGACATCCTTGGTTACTGGTAGTATGTGTATTGCCAAAATC
CAGGAATAATATGCTTCCCTGGCATGCCATCACTTTTTTATGAGTATTGT
CACTTAGCCAGGGAAACATTGGTTTGTAGCCATAGAACAAGGCATTTTAA
CCATTCAAAGAATATCCTGCTTTGACAAACACTTATAATGTGTTTTCTCA
CAGGAACCATGCTATCTTTATATCTTATGCCTGTGCAATGAAATTTGCTC
ACTTCTTTTCCCAAAATATTGATTTGCCAAAANTTTTTCAGTGATATTCT
TTTTAACCGTATGACCCATTATTCTAAGTGATTGGCCCG

Query= MSMg01no440_k11.g1 MSMg01no440_k11.g1 CHROMAT_FILE:
MSMg01no440_k11.g1 PHD_FILE: MSMg01no440_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:11 2005
         (518 letters)



>mm_chr3_43318367_43319284
          Length = 918

 Score =  971 bits (502), Expect = 0.0
 Identities = 514/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataaatgaattgagacctttgaataaattcattgcttcaaagtaatattcttgtttaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 aaataaatgaattgagaactttgaataaattcattgcttcaaagtaatattcttgtttaa 825

                                                                       
Query: 61  atgaaagtctttgtagaatatcagacaagatggtagatcagacaatttttaactcaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 atgaaagtctttgtagaatatcagacaagatggtagatcagacaatttttaactcaactg 765

                                                                       
Query: 121 atgataattttcatagatcattatatgcagaaaagaccagttcacatttaacactcctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 atgataattttcatagatcattatatgcagaaaagaccagttcacatttaacactcctat 705

                                                                       
Query: 181 gctagagacaaagttctgcatattacacaagtgatcttgccccacatagacagtcaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gctagagacaaagttctgcatattacacaagtgatcttgccccacatagacagtcaataa 645

                                                                       
Query: 241 gaaactcttagagcacaaaattcattttgagtattcactgccaatctctattttggtaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 644 gaaactcttagagcacaaaattcattttgagtattcactgccaatctctattttggtaag 585

                                                                       
Query: 301 agagcacattcaatggtagatataacaagacatccttggttactggtagtatgtgtattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agagcacattcaatggtagatataacaagacatccttggttactggtagtatgtgtattg 525

                                                                       
Query: 361 ccaaaatccaggaataatatgcttccctggcatgccatcacttttttatgagtattgtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ccaaaatccaggaataatatgcttccctggcatgccatcacttttttatgagtattgtca 465

                                                                       
Query: 421 cttagccagggaaacattggtttgtagccatagaacaaggcattttaaccattcaaagaa 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 464 cttagccagggaaacattggtttgtaaccatagaacaaggcattttaaccattcaaagaa 405

                                                 
Query: 481 tatcctgctttgacaaacacttataatgtgttttctca 518
           ||||||||||||||||||||||| ||||||||||||||
Sbjct: 404 tatcctgctttgacaaacacttaaaatgtgttttctca 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)