BAC Information

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BAC

Clone NameMSMg01-440L21
Chromosome3 (Build37)
Map Location 78,315,156 - 78,315,529
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479, LOC100041691
Downstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440L21.T7 (MSMg01no440_l21.b1)MSMg01-440L21.TJ (MSMg01no440_l21.g1)
ACCAG530786AG530787
length768762
length of high quality
(start - end)		464 (76 - 539)489 (78 - 566)
definitionCHROMAT_FILE: MSMg01no440_l21.b1 PHD_FILE: MSMg01no440_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:18 2005CHROMAT_FILE: MSMg01no440_l21.g1 PHD_FILE: MSMg01no440_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTGTACCATTTGAGCAAGCGGTAGAATAACACACAACT
AAACCAGTCAAAGAAATGATTGGCTTTTGTGCGTATGTTGAAGGCTGATC
CAAGATTTCTTAAAATGGGATATGGGAGAAAGAAGGGGATAAAAGTAACA
TATGTAGGTCAACATCAGTGCTCCTTAGTGATTACACAGCATACTTTCAT
TGCAAACACCACCTCCGTCAAACATCACACAATTCAATATTAAATGTTTA
GGTATCAAGTGATGGCAAACTAACTAAAATGTGAAAAGGAAACTCATTTT
TGTAGGTTACATGTTAACTTTTGAATTCACCACACCTTACACTAATATTA
TCAGGCTAAATACAGATTCCTAATGATTACTGTTAAAAATACATAACAAA
ATACTTCCAGTCTGGGTGATGTGCAACATTTCATATGCAAGTATATGATA
TTAAGAAAGCTAATGATAAATAATATCGTCATAAATTGTCCCACTTCAGA
GAAGCCAAGCATCTCACTGTCAAACAAGCTTTTGGAGTAAAGCCCCCTTC
ACTGACTGACACTGCTGCTTTTTCCTGTTCAGAACCACACTTCCATGATG
CATGCTGCTTTGACGTTTTACACCGTGATCTTGATTTCTGGGCCCCTGCC
TCCACAATTTCCCTCCGGGCTTTAGCTCCCCCNATCTATTAGGCTTAAGG
TGGCCGCCCCCTTCCCCC

NNNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAACTCTGTGCCCCATT
TTTTAATTGGATTGTTGGTGTTTAACTTCTTGAGTACTGTATAATCTTTG
GATATTATTAACCCTCTGCCAGATATATGGTTGGTGAAAATCCTTTCCCA
ATCTGTAGGTTTTCATTTTGTCCTATTAACAATGTTCTTTGCCTTACAAA
AGGTTTGCAGTTTCATGAGTTCCAATTTATCAATTCTTTATCTTAGAGCT
GAGCCATTGTTCTGTTCAGGAACTTGTTTCCGATATCAATGCTTTCAAGG
GTACTTCCCACTTTCTCTTCTATGAGATTTATTGTATCTGGTTTTATGAT
GAGGTCCTTGATCCCCTTGAAATTGATTTTGTTTAGGGTGAAAATATGAA
TATATTTTAATTCTTCTACAATGTAGACATCCTTTAGTTGTTTTATTGCC
CTGAACAGAACTTCAAATAGGGAGTAGATAGGGAAAGAGTGGGCAGCCTT
GTCTTGTCCCTGATTTTAATGGGAGTGTAACTTTTCCTCCATTTATCTCT
AAGNTGGGTATTGGCTTGGTGGATATTGCTTTTGATATGTTTATGTATGG
GCCCTGGATAAATGATCTCTCTCCTATACTTTTACATGAAGGGGGGGTGG
TTTTTGTCAAAGGTTTTTCGTAACAAAAGAAAGAAACGAATTTTTTTTAA
GTGCCGAGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_l21.b1 MSMg01no440_l21.b1 CHROMAT_FILE:
MSMg01no440_l21.b1 PHD_FILE: MSMg01no440_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:18 2005
         (464 letters)



>mm_chr3_78314956_78315819
          Length = 864

 Score =  685 bits (354), Expect = 0.0
 Identities = 369/374 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagcggtagaataacacacaactaaaccagtcaaagaaatgattggcttttgtgcgta 60
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gcaagcggtacaataacacacaactaaaccagtcaaaggaatgattggcttttgtgcgta 260

                                                                       
Query: 61  tgttgaaggctgatccaagatttcttaaaatgggatatgggagaaagaaggggataaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgaaggctgatccaagatttcttaaaatgggatatgggagaaagaaggggataaaag 320

                                                                       
Query: 121 taacatatgtaggtcaacatcagtgctccttagtgattacacagcatactttcattgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacatatgtaggtcaacatcagtgctccttagtgattacacagcatactttcattgcaa 380

                                                                       
Query: 181 acaccacctccgtcaaacatcacacaattcaatattaaatgtttaggtatcaagtgatgg 240
           ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 acaccacctccatcaaacatcacacaattcaatgttaaatgtttaggtatcaagtgatgg 440

                                                                       
Query: 241 caaactaactaaaatgtgaaaaggaaactcatttttgtaggttacatgttaacttttgaa 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaactaactaaaatgtgaagaggaaactcatttttgtaggttacatgttaacttttgaa 500

                                                                       
Query: 301 ttcaccacaccttacactaatattatcaggctaaatacagattcctaatgattactgtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaccacaccttacactaatattatcaggctaaatacagattcctaatgattactgtta 560

                         
Query: 361 aaaatacataacaa 374
           ||||||||||||||
Sbjct: 561 aaaatacataacaa 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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