Query= MSMg01no440_n13.b1 MSMg01no440_n13.b1 CHROMAT_FILE:
MSMg01no440_n13.b1 PHD_FILE: MSMg01no440_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:26 2005
(510 letters)
>mm_chr3_119831005_119831914
Length = 910
Score = 909 bits (470), Expect = 0.0
Identities = 500/514 (97%), Gaps = 8/514 (1%)
Strand = Plus / Plus
Query: 5 gaattctgac-aatatctttagctggactcatgatactatgtggaactaaatctcacatt 63
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattctgacaaatatatttagctggactcatgatactatgtggaactaaatctcacatt 256
Query: 64 tctgccctttatc-------tttttttttttaattttgtgttgtggtaagagccattttt 116
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctgcccttcatcttttttttttttttttttaattttgtgttgtggtaagagccattttt 316
Query: 117 acttacttcttttctttttaggttttaccttttacttttaagtgtttatgagtgggtctg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acttacttcttttctttttaggttttaccttttacttttaagtgtttatgagtgggtctg 376
Query: 177 agtgtaggtttgtgcaaatgaatgcagtggcatggaaggcagaggatgaagatagctctc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agtgtaggtttgtgcaaatgaatgcagtggcatggaaggcagaggatgaagatagctctc 436
Query: 237 ctgcaactgaagttaaaggcaggtgggagctgccctacactgactctaacaatggaactc 296
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 437 ctgcaactgaagttaaaggcaggtgggagctgccctacacagacactaacaatggaactc 496
Query: 297 tagttccctgtaaggacagtgttcatgcgtaaccccagtcccaggggaagcaacttaatg 356
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 497 tagttccctgtaaggacagtgttcatgcgtaaccccaggcccaggggaagcaacttaatg 556
Query: 357 aaggctcacagttctcagttacagtccttcatcatgcaacagacaagatcttagggcagt 416
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 aaggctcacagttctcagttacagtccttcatcgtgcaacagacaagatcttagggcagt 616
Query: 417 tgcctgcattgcagccccagagagaaaacagggagatgaatgctccacctcaactcaatg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgcctgcattgcagccccagagagaaaacagggagatgaatgctccacctcaactcaatg 676
Query: 477 tctcctttttatacagcgctagtcacaaactgtg 510
||||||||||||||||||||||||||||||||||
Sbjct: 677 tctcctttttatacagcgctagtcacaaactgtg 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_n13.g1 MSMg01no440_n13.g1 CHROMAT_FILE:
MSMg01no440_n13.g1 PHD_FILE: MSMg01no440_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:26 2005
(507 letters)
>mm_chr3_119991553_119992461
Length = 909
Score = 944 bits (488), Expect = 0.0
Identities = 504/510 (98%), Gaps = 4/510 (0%)
Strand = Plus / Minus
Query: 1 ctaacacttaaacacctgtgtccatcaaacagaacacacaggatcacagctagagctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ctaacacttaaacacctgtgtccatcaaacagaacacacaggatcacagctagagctgtt 650
Query: 61 cttgactttgcaatttcattgactgacagtttaatatctatttattttcacatctgacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cttgactttgcaatttcattgactgacagtttaatatctatttattttcacatctgacac 590
Query: 121 tagtaaagacaggctggcatcatgaatgtcaagacattatgctgacaacta-tttttttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 589 tagtaaagacaggctggcatcatgaatgtcaagacattatgctgacaactattttttttt 530
Query: 180 tcatcttt--ggggggtggtgggtggaggaaggttcaacactgtgaagaaaagtgttctt 237
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tcatctttggggggggtggt-ggtggaggaaggttcaacactgtgaagaaaagtgttctt 471
Query: 238 ttcaatgactgcttctccagtaaagaccaaattacagttcagatataattggcagtagct 297
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttcaatgactgcagctccagtaaagaccaaattacagttcagatataattggcagtagct 411
Query: 298 attgataggttacctgtaatattgatataggagttggtacattcaatttgagattcacta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 attgataggttacctgtaatattgatataggagttggtacattcaatttgagattcacta 351
Query: 358 gtaaactccctgctactattacactgcagaactaaatgtgtaattatactatttaaatag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtaaactccctgctactattacactgcagaactaaatgtgtaattatactatttaaatag 291
Query: 418 ctgaagcagctgccttgactgtggactgtgtaaacagtgttttcccggctcaaattgaat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctgaagcagctgccttgactgtggactgtgtaaacagtgttttcccggctcaaattgaat 231
Query: 478 gtttcggatacggtctcttgttttcagcct 507
||||||||||||||||||||||||||||||
Sbjct: 230 gtttcggatacggtctcttgttttcagcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 909
Length adjustment: 10
Effective length of query: 497
Effective length of database: 899
Effective search space: 446803
Effective search space used: 446803
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
