NGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTTAATATCAATTGATAGGCGAGGGCCTAGGCCATTGTAG
ATGGTGATATCTCTGAACTGGTGGTTCTGGGTTCCATAAGAAAGCAGGCT
GAGCAAGTCAGTAAGCAGCACCCTTCCATGGACTCTGTATGACTTCCTGC
CTTCAGTCCTCTGAGCCCTTTGAGTTCCTGTCCTGACAATCTTTAATGGC
TCACTATTTAATGCCTATGATGTGGGAAGATAAGCTAAATAATCCCTTTC
TCTTCCCAAGTTGCCTTTAGTAATGGTATCTTATTACAGAAATAGAAGTA
AGTGATAAGACCATGTACTAAAAATGTTCACAGAGGACCTATGGACCAGG
AGCTGTTCTGGTGCCCTAGGTTGTCTTAGCTAGTCGAGCTGAGCTTTTGG
GTCTTTCTCTGTCCTCCTGAATCTCGTGATGTGAGAGGAGAAATGCACCT
GTGCTCTCTCCCACTGTTAATCTGATCCTGGTGGGGATCGTTGGCCTTCT
TCCAGTTTATTTATTTGTTTAATGTGTTCATTAATGTGCTTCTCAAACTC
CAGGTTTGTTGTACGACCATTAATAAATGCAAGGGGTCCTGTGTTGACCC
TATAATGGTTTCCTTTAATTCCCTTGATGGTCCTTATTATGCTCCTCAAG
TAATTTATTCGTTATTACGAAGTGCCAACTTTGATACTACAATCGGTCTG
GATCAT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCAATCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGATGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACTGGAGGATC
CCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAAACTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATCAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACCCAGTCACAACAGACCTCACATGATATGTACTCACTGATAA
GTGGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACATTTT
TGCAAACACTGGAAACTTCAGAAGAACAAAGATCATGGTGGG

Query= MSMg01no440_o08.b1 MSMg01no440_o08.b1 CHROMAT_FILE:
MSMg01no440_o08.b1 PHD_FILE: MSMg01no440_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:30 2005
         (482 letters)



>mm_chr3_49525898_49526779
          Length = 882

 Score =  913 bits (472), Expect = 0.0
 Identities = 478/480 (99%), Gaps = 1/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctttaa-tatcaattgataggcgagggcctaggccattgtagatggtgatatc 62
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcctttaactagcaattgataggcgagggcctaggccattgtagatggtgatatc 262

                                                                       
Query: 63  tctgaactggtggttctgggttccataagaaagcaggctgagcaagtcagtaagcagcac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctgaactggtggttctgggttccataagaaagcaggctgagcaagtcagtaagcagcac 322

                                                                       
Query: 123 ccttccatggactctgtatgacttcctgccttcagtcctctgagccctttgagttcctgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccttccatggactctgtatgacttcctgccttcagtcctctgagccctttgagttcctgt 382

                                                                       
Query: 183 cctgacaatctttaatggctcactatttaatgcctatgatgtgggaagataagctaaata 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cctgacaatctttaatggctcactatttaatgcctatgatgtgggaagataagctaaata 442

                                                                       
Query: 243 atccctttctcttcccaagttgcctttagtaatggtatcttattacagaaatagaagtaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atccctttctcttcccaagttgcctttagtaatggtatcttattacagaaatagaagtaa 502

                                                                       
Query: 303 gtgataagaccatgtactaaaaatgttcacagaggacctatggaccaggagctgttctgg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgataagaccatgtactaaaaatgttcacagaggacctatggaccaggagctgttctgg 562

                                                                       
Query: 363 tgccctaggttgtcttagctagtcgagctgagcttttgggtctttctctgtcctcctgaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgccctaggttgtcttagctagtcgagctgagcttttgggtctttctctgtcctcctgaa 622

                                                                       
Query: 423 tctcgtgatgtgagaggagaaatgcacctgtgctctctcccactgttaatctgatcctgg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tctcgtgatgtgagaggagaaatgcacctgtgctctctcccactgttaatctgatcctgg 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)