TTTTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATGATCGTGGGCCCACTGTCGTACTTCTCTGGCTG
TGAAATGAGTTCCTTGGTCAGAAGCAATACTGTGTGGAATACCATGACGA
TAGATAAGGCATTCTGTCAGTCCGTGAATGGTGGTTTTAGCAGAGGCATT
ACGTGCAGGAAAGGCAAATCCATAACCAGAATAAGTATCTACTCCAGTAA
CAACAAAACGCTGTCCTTTCCATGAAGGAAGTGGTCCAATGTAGTCAACC
TGCCACCAGGTTGCTGGCTGGTCACCTCGAGGAATGGTGCCATATCTGGG
GCTCAGTGTTGGTTTCTGCTGTTGGCAGATCTGGCAAACAGCAGCAGCTG
TAGCCAGGTCAGCCTTGGTGAGTGGAAGCCCGTGTTGCTGAGCCCAAGCA
TAACCTCCATCTCGACCACCATGGCCACTTTGTTCATGTGCCCATTGAGC
AATGACAGGNATGGCTGGTGAGAGAGGCTGACTGTCCCAGAAAGGGTCAT
CTTATCCCCTTGATATTGAACTCCCCTCGGCTGAGGCACCCTTTGGTGAA
CTTTTTCTGGGACACCATATCCTCCCCACCCTTGCCCCTTGGAAAGAACT
TCCCCTTATTTCTTCCCAAAAGTTTTCTCTCCCATTGTTTTTCTTTTTAT
ACTTGTTTAAAGTTTATCTTCCGGCTGTCCCTTTGCTTACATTTTTG

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCATTGGTTCAGCAAGG
GCTATAGCCATACCTGGGCTCTGTTAGACTGCATGCTCTGAAAAGAATAA
ATTTGAACTACATGGGAATACAGAACAAACAACCACTTCCCATGACTTTT
CCAAAAAGTGTATCCTTTTCCTAGCAGACATATCTACAGCTAGATCCTCT
GTCTTCCTAACCATCCTGAGTACACCGCTACCTAAAGCACAAATAGATCA
CATGCTTTCTAATGCTTTAATCCATAGGAAATAAGCTGGCTACTTTTAAT
TTGTGTCAACTTGACACAAATGAAAGTCATATTAGAGGAGAATTGGCTCT
ATAAGAATTAGCCTGTGGACACACTTTTGGGGGTATTTTTTTTTAATTGT
GCTAATTATGTAGGAGGGCTAAGCCTTTTATGGATGTTGCCAACCCTAGG
AGGGTAGGTTGAGTGGGGAAAANANTATGNTNNNNTTTTTTTTTTTTNNT
TTTNNTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTNNTTTTTTTTTTTTTNTNTTTTTTTTTNTNTTTTNTTNTTTTTTTTN
TTNTTTTTTTTTTTTTTCTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTT
ATTTTTTTTTTTTTTTTTNNTTNNTTTTATTTTTTTNTTTTTATNTTTTA
T

Query= MSMg01no440_p10.g1 MSMg01no440_p10.g1 CHROMAT_FILE:
MSMg01no440_p10.g1 PHD_FILE: MSMg01no440_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:35 2005
         (420 letters)



>mm_chr3_56666974_56667793
          Length = 820

 Score =  781 bits (404), Expect = 0.0
 Identities = 416/420 (99%), Gaps = 1/420 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcattggttcagcaagggctatagccatacctgggctctgttagactgcatgctctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 attcattggttcagcaagggctatagccatacctgggctctgttagactgcatgctctga 394

                                                                       
Query: 61  aaagaataaatttgaactacatgggaatacagaacaaacaaccacttcccatgacttttc 120
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 393 aaagaataaatttgaactacataggaacacagaacaaacaaccacttcccatgacttttc 334

                                                                       
Query: 121 caaaaagtgtatccttttcctagcagacatatctacagctagatcctctgtcttcctaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caaaaagtgtatccttttcctagcagacatatctacagctagatcctctgtcttcctaac 274

                                                                       
Query: 181 catcctgagtacaccgctacctaaagcacaaatagatcacatgctttctaatgctttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 catcctgagtacaccgctacctaaagcacaaatagatcacatgctttctaatgctttaat 214

                                                                       
Query: 241 ccataggaaataagctggctacttttaatttgtgtcaacttgacacaaatgaaagtcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ccataggaaataagctggctacttttaatttgtgtcaacttgacacaaatgaaagtcata 154

                                                                       
Query: 301 ttagaggagaattggctctataagaattagcctgtggacacacttttgggggtatttttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 153 ttagaggagaattggctctataagaattagcctgtggacacacttttgggggta-ttttt 95

                                                                       
Query: 361 tttaattgtgctaattatgtaggagggctaagccttttatggatgttgccaaccctagga 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 94  tttaattgtgctaattatgtaggagggctaagccctttatggatgttgccaaccctagga 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)