Query= MSMg01no441_g18.b1 MSMg01no441_g18.b1 CHROMAT_FILE:
MSMg01no441_g18.b1 PHD_FILE: MSMg01no441_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:11 2005
(457 letters)
>mm_chr3_105263694_105264552
Length = 859
Score = 783 bits (405), Expect = 0.0
Identities = 456/497 (91%), Gaps = 40/497 (8%)
Strand = Plus / Plus
Query: 1 tatttggtctttgacaattccattggtgggatcctggtgattcgtttttttgtttttttg 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttggtctttgacaattctattggtgggatcctggtgattcgtttttttgtttttttg 260
Query: 61 tttttt--ttttcctggctgaacccctgttgtggtgctgtggttccacagtgctgcgtgt 118
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttgttttcctggctgaacccctgttgtggtgctgtggttccacagtgctgcgtgt 320
Query: 119 gtttattgggaatgactgagcaggtgattggacctcttaaagtgattacatttgtcattc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttattgggaatgactgagcaggtgattggacctcttaaagtgattacatttgtcattc 380
Query: 179 tgccacaagggaggagcagggaggagagcaagggatgtcaccatccatttgcgaaggcca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccacaagggaggagcagggaggagagcaagggatgtcaccatccatttgcgaaggcca 440
Query: 239 catttgatccaggcatttgctttactctgtctgtctaaagaaagctacacagccattctt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttgatccaggcatttgctttactctgtctgtctaaagaaagctacacagccattctt 500
Query: 299 cccaac-ca-------------------------acacacacacacacacttgcatgcat 332
|||||| || ||||||||||||||||||||||||||
Sbjct: 501 cccaacacacacacacacacacacacacacacacacacacacacacacacttgcatgcat 560
Query: 333 atacatgcatacacatacacacacatgcattcacacacatgcacacatgcatacacacat 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacatgcatacacatacacacacatgcattcacacacatgcacacatgcatacacacat 620
Query: 393 ------------acacagatgcacacacacatttgcatacacatacacacaaatgcatac 440
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatacacatatacacagatgcacacacacatttgcatacacatacacacaaatgcatac 680
Query: 441 acatatacacatgcata 457
|||||||||||||||||
Sbjct: 681 acatatacacatgcata 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 859
Length adjustment: 10
Effective length of query: 447
Effective length of database: 849
Effective search space: 379503
Effective search space used: 379503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_g18.g1 MSMg01no441_g18.g1 CHROMAT_FILE:
MSMg01no441_g18.g1 PHD_FILE: MSMg01no441_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:11 2005
(493 letters)
>mm_chr3_105426410_105427301
Length = 892
Score = 849 bits (439), Expect = 0.0
Identities = 457/463 (98%), Gaps = 2/463 (0%)
Strand = Plus / Minus
Query: 32 aaagaaaggaagaaa-aaagaaagaaagaaagaaagcccaaacccaactggngaaagaaa 90
|||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 728 aaagaaagaaagaaagaaagaaagaaagaaagaaagcccaaacccaactgg-gaaagaaa 670
Query: 91 gctcattaatgttttcgctctctcctcattaaggaagagctcactcataaatattcacag 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gctcattaatgttttcgctctctcctcattaaggaagagctcactcataaatattcacag 610
Query: 151 aattctaaagtaagatggagctgaaaggtaagttggtgcagaactattaaggttgctgag 210
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 609 aattctaaagtaagatggagctgaaaggtaagttggtgcagaactattaaggctgctgag 550
Query: 211 cagactgaccaggctttagctttcatcttcccaaagcctatgggtctggaatactcctgc 270
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 549 cagcctgaccaggctttagctttcatcttcccaaagcctaggggtctggaatactcctgc 490
Query: 271 ctcccagagggatacccacaatctgtccctggacagcctaggagagcagttcacaggtac 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctcccagagggatacccacaatctgtccctggacagcctaggagagcagttcacaggtac 430
Query: 331 aattctgtctcctgagtctgggaggatactgaagatctcccagcatgcccctgttctctt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aattctgtctcctgagtctgggaggatactgaagatctcccagcatgcccctgttctctt 370
Query: 391 ccaccttatgatgaccaaaaccaaagagggtgcacagagagagtgggcaggttgacctcc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccaccttatgatgaccaaaaccaaagagggtgcacagagagagtgggcaggttgacctcc 310
Query: 451 ccagccacaggctttctaccacttgctcctagtcttgaaccag 493
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccagccacaggctttctaccacttgctcctagtcttgaaccag 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
