Query= MSMg01no442_e11.b1 MSMg01no442_e11.b1 CHROMAT_FILE:
MSMg01no442_e11.b1 PHD_FILE: MSMg01no442_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:22 2005
(436 letters)
>mm_chr3_20208045_20208879
Length = 835
Score = 812 bits (420), Expect = 0.0
Identities = 429/432 (99%), Gaps = 1/432 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgcctgtcctctagaagaatctgactcatgacagctatgacaatattatatgt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaattcttgcctgtgctctagaagaatctgactcatgacagctatgacaatattatatgt 576
Query: 65 catataatattggcttgttgcagatcatttgaaaggagatccatcctcagctggcttttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 catataatattggcttgttgcagatcatttgaaaggagatccatcctcagctggcttttg 516
Query: 125 ggaaaagcttggctcaacaaaaccagagcaagcagatatccggatagcactggttcctgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaaaagcttggctcaacaaaaccagagcaagcagatatccggatagcactggttcctgg 456
Query: 185 agtacacagtcaattcttgaagaatttttccaatcttctccactgtattactacattcct 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 455 agtacacagtcaattcttgaagaatttttccaatcttctccactgtatt-ctacattcct 397
Query: 245 attcttgctgggagggaaagttcttggaaattctcagatctccatttgaattttaatggt 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 396 attcttgctgggagggaaagttcttggaaattcccagatctccatttgaattttaatggt 337
Query: 305 tgtctcccttgaaaattgaactcgttaaaataaaaaatgttcatcgaccttgcagcatag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgtctcccttgaaaattgaactcgttaaaataaaaaatgttcatcgaccttgcagcatag 277
Query: 365 cactggaactctggatgacattacagaggatctacaaaacaaacagactgcaactgtctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cactggaactctggatgacattacagaggatctacaaaacaaacagactgcaactgtctt 217
Query: 425 ctgtcagtaatt 436
||||||||||||
Sbjct: 216 ctgtcagtaatt 205
Score = 375 bits (194), Expect = e-108
Identities = 197/198 (99%), Gaps = 1/198 (0%)
Strand = Plus / Minus
Query: 55 tattatatgtcatataatattggcttgttgcagatcatttgaaaggagatccatcctcag 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tattatatgtcatataatattggcttgttgcagatcatttgaaaggagatccatcctcag 776
Query: 115 ctggcttttgggaaaagcttggctcaacaaaaccagagcaagcagatatccggatagcac 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctggcttttgggaaaagcttggctcaacaaaaccagagcaagcagatatccggatagcac 716
Query: 175 tggttcctggagtacacagtcaattcttgaagaatttttccaatcttctccactgtatta 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tggttcctggagtacacagtcaattcttgaagaatttttccaatcttctccactgtatt- 657
Query: 235 ctacattcctattcttgc 252
||||||||||||||||||
Sbjct: 656 ctacattcctattcttgc 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 436
Length of database: 835
Length adjustment: 9
Effective length of query: 427
Effective length of database: 826
Effective search space: 352702
Effective search space used: 352702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no442_e11.g1 MSMg01no442_e11.g1 CHROMAT_FILE:
MSMg01no442_e11.g1 PHD_FILE: MSMg01no442_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:22 2005
(141 letters)
>mm_chr3_20097060_20097600
Length = 541
Score = 250 bits (129), Expect = 4e-71
Identities = 138/141 (97%)
Strand = Plus / Plus
Query: 1 agtcactgagattacctgacagctcagcatgtcacagatcttcatttaggtaggcgaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcactgagattacctgacagctcagcatgtcacagatcttcatttaggtaggcgaagg 260
Query: 61 ctattacaatccagaaggactaggagataggtccctgagacaagtgggtttgatttggta 120
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct: 261 ctattacaatccagaaggactaggagataggtccctgagaccagtggttttgatttgata 320
Query: 121 cgagaggagggtgagaggagg 141
|||||||||||||||||||||
Sbjct: 321 cgagaggagggtgagaggagg 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space: 70889
Effective search space used: 70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
