Query= MSMg01no442_f18.b1 MSMg01no442_f18.b1 CHROMAT_FILE:
MSMg01no442_f18.b1 PHD_FILE: MSMg01no442_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:29 2005
(359 letters)
>mm_chr3_135935514_135936272
Length = 759
Score = 603 bits (312), Expect = e-177
Identities = 345/358 (96%), Gaps = 6/358 (1%)
Strand = Plus / Minus
Query: 6 gaattctctgattt---atttatggttgttcttttaaatttagtgcccttgaattcatct 62
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattctctga--taaaatttatggttgttcttttaaatttagtgcccttgaattcatct 593
Query: 63 gggcaattcttat-aaaaaaatttctataagacgatttggattttgagtttgcggctgcc 121
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 592 gggcaattcttataaaaaaaatttctataagacgacttggattttgagtttgcggctgcc 533
Query: 122 catttttaccatttgtagttttgtgatgtgacctgatcatgtggagttctgtccttttta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 catttttaccatttgtagttttgtgatgtgacctgatcatgtggagttctgtccttttta 473
Query: 182 ttcccctcagtgtctgtctgatgtttgattttagaaatacctcaggcttttcccatgcat 241
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttccccttagtgtctgtctgatgtttgattttagaaatacctcaggcttttcccatgcat 413
Query: 242 atgaccttgtcttgccttctttgggggcagggtgagcggaggttcttttttgcttttgtt 301
||||||||||||||| |||||||||||||||| ||| |||||||||||| |||| |||||
Sbjct: 412 atgaccttgtcttgctttctttgggggcagggggaggggaggttcttttatgctcttgtt 353
Query: 302 gaaaatctattctatgccattcaactgaattctccttcattctatgcttaaagtgtga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaaaatctattctatgccattcaactgaattctccttcattctatgcttaaagtgtga 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no442_f18.g1 MSMg01no442_f18.g1 CHROMAT_FILE:
MSMg01no442_f18.g1 PHD_FILE: MSMg01no442_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:29 2005
(384 letters)
>mm_chr3_135843700_135844485
Length = 786
Score = 644 bits (333), Expect = 0.0
Identities = 367/385 (95%), Gaps = 12/385 (3%)
Strand = Plus / Plus
Query: 1 tatacgctcagacccacctaattgatgtaagcatctcttctttcatgcttgtctcactgt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tatacgctcagacccacctaattgatgtaagcatttcttctttcatgcttgtctcactgt 260
Query: 61 attcatcaaagggaaatgcccaagttaggacaagaatattgttggcataaatttctgtgg 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 attcatcaaagggaaatgcccaagttaggacaagaatattattggcataaatttctgtgg 320
Query: 121 ttgtaagacatg--catgcacatcatagtctacatagagtggatctaagccatactggcc 178
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttgtaagacatatacatgcacatcatagtctacgtagagtggatctaagccatactggcc 380
Query: 179 attactgttttcaaaacaaaacaaaacaaaacaaaagagaaaacaaaacaaacaaaacaa 238
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 attactgttttcaaaacaaaacaaaa----------gagaaaacaaaacaaacaaaacaa 430
Query: 239 aaacccaattccagttccagctgaccacaaagcccacactcatctctaagaccagaatta 298
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 431 aaacccaattccagttccagctgaccacaaagcccacactcatatctaaggccagaatta 490
Query: 299 aggttggacaagaaaggtatttatgttggttgtaaaatttaagaaagttctaagatctca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aggttggacaagaaaggtatttatgttggttgtaaaatttaagaaagttctaagatctca 550
Query: 359 caaatatcaataaatattatttcac 383
|||||||||||||||||||||||||
Sbjct: 551 caaatatcaataaatattatttcac 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 786
Length adjustment: 9
Effective length of query: 375
Effective length of database: 777
Effective search space: 291375
Effective search space used: 291375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
