Query= MSMg01no442_g18.b1 MSMg01no442_g18.b1 CHROMAT_FILE:
MSMg01no442_g18.b1 PHD_FILE: MSMg01no442_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:34 2005
(281 letters)
>mm_chr3_144158246_144158926
Length = 681
Score = 478 bits (247), Expect = e-139
Identities = 271/283 (95%), Gaps = 10/283 (3%)
Strand = Plus / Minus
Query: 4 ggaattctagaagatttccc----cctgtggacaacctacttctgtaatttttttgaacg 59
|||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaattctagaaga----cctagtcctgtggacaacctacttctgtaatttttttgaacg 446
Query: 60 tt-aaattaggttaatcctgatgcctttttaaaactatagtcattcatattcgttacata 118
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgaaa-taggttaatcctgatgcctttttaaaactatagtcattcatattcgttacata 387
Query: 119 catacatacaaattaatgtgaggcagtgatatttcatacatacctatgctaaactgtgtg 178
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 386 catacatacaaattaatgtgaggcagtgatattccatacatacctatgctaaactgtgtg 327
Query: 179 tgtactccatgtcccttactcccacacatgagataaaatatacagttttttacttttctg 238
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 326 tgtactccatgtcccttactcccacacacgagataaaatatacagttttttacttttctg 267
Query: 239 tgtctagcaatgtccttttcagaaacttacattatttcattgt 281
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtctagcaatgtccttttcagaaacttacattatttcattgt 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no442_g18.g1 MSMg01no442_g18.g1 CHROMAT_FILE:
MSMg01no442_g18.g1 PHD_FILE: MSMg01no442_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:35 2005
(239 letters)
>mm_chr3_143993405_143994043
Length = 639
Score = 456 bits (236), Expect = e-133
Identities = 236/236 (100%)
Strand = Plus / Plus
Query: 1 aacactgctgccttggctctgggaacacatctatcacagaaaccgagagagcgtctgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacactgctgccttggctctgggaacacatctatcacagaaaccgagagagcgtctgcat 260
Query: 61 ttacacacggaaaaggttcgcttcgtccttgatcacgataatgacttagagttctgttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacacacggaaaaggttcgcttcgtccttgatcacgataatgacttagagttctgttga 320
Query: 121 gcctttcatccacgggggcgcccctgcccctgcagacgtgggccggggaggagctctcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctttcatccacgggggcgcccctgcccctgcagacgtgggccggggaggagctctcaa 380
Query: 181 cagtcacagccccattcctgccatggtgagagaggaaatggttctgagggaggtgg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcacagccccattcctgccatggtgagagaggaaatggttctgagggaggtgg 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
