Query= MSMg01no442_p01.b1 MSMg01no442_p01.b1 CHROMAT_FILE:
MSMg01no442_p01.b1 PHD_FILE: MSMg01no442_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:22 2005
(364 letters)
>mm_chr3_81768548_81769309
Length = 762
Score = 654 bits (338), Expect = 0.0
Identities = 354/360 (98%), Gaps = 2/360 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaacacccagctaactcagctagtgggagcagcacagtgaggttggcccatgt 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaacactgagctaactcagctagtgggagcagcacagtgaggttggcccatgt 264
Query: 65 gatatgtgaaagctttagggtttgtgttagggatatctatctatttattaaaacagcaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatatgtgaaagctttagggtttgtgttagggatatctatctatttattaaaacagcaat 324
Query: 125 ggaacacgagaggttttaagcaaaaggcagagactatcaggttttcattttggaaagaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggaacacgagaggttttaagcaaaaggcagagactatcaggttttcattttggaaagaca 384
Query: 185 actattactggagcacagagaataaactggaaggcctacggtggggaagggataggacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actattactggagcacagagaataaactggaaggcctacggtggggaagggataggacag 444
Query: 245 tcaagagactttagttttagtcttggtggtatgtgtaaaaaaaaataaacatgagagaac 304
||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct: 445 tcaagagactttagttttagtcttggtggtaggtgtaaaaaaaaa--atcatgagagaac 502
Query: 305 tattgtaagatacaaagctgatacagccatctctcagaaatattgttgagggactggaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tattgtaagatacaaagctgatacagccatctctcagaaatattgttgagggactggaga 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 762
Length adjustment: 9
Effective length of query: 355
Effective length of database: 753
Effective search space: 267315
Effective search space used: 267315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no442_p01.g1 MSMg01no442_p01.g1 CHROMAT_FILE:
MSMg01no442_p01.g1 PHD_FILE: MSMg01no442_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:22 2005
(521 letters)
>mm_chr3_81805457_81806371
Length = 915
Score = 915 bits (473), Expect = 0.0
Identities = 507/521 (97%), Gaps = 6/521 (1%)
Strand = Plus / Minus
Query: 1 tataatgatgataattagcaggaatttgatacagagctattaataatttactaaagtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tataatgatgataattagcaggaatttgatacagagctattaataatttactaaagtggt 656
Query: 61 tccaaataaaaagtccatgaataatagctcattttccagaatctattgtacaacttaatt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tccaaataaaaagtccatgagtaatagctcattttccagaatctattgtacaacttaatt 596
Query: 121 tttatgacttcgtgcaaatatacctttctgagattagctcttcttgtctgtacaatgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tttatgacttcgtgcaaatatacctttctgagattagctcttcttgtctgtacaatgctt 536
Query: 181 tgtgtaaagaaacttttcaaatttcaaattaatggatatttctaataatttataaatgag 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 535 tgtgtaaagaaacttttcaaatttcaaattaatgcatatttctaataatttataaatgaa 476
Query: 241 acagattgacaaccccagcaagcatctactaggtttaatatatgaagactatactgaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 acagattgacaaccccagcaagcatctactaggtttaatatatgaagactatactgaatg 416
Query: 301 tgatattgtgtatactagacactaatgccctaagaggctgattttgatgaagtcattgac 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgatattgtgtgtactagacactaatgccctaagaggctgattttgatgaagtcattgac 356
Query: 361 aagtttgcattactgtttaaatagaaatgtaatatttctcttaaacactgcaatggataa 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 aagtttgcattactgtttaaatagaaatgtaatatttctattaaacactgcaatggataa 296
Query: 421 taatgtagtccttttctaaaaataaaatgataataatagtattattactactttttcata 480
||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 295 taatgcagtccttttctaaaaataaaatgataata---gtatta---ctactttttcata 242
Query: 481 catttttatttattcccttttgtgttcggcatttttacaca 521
|||||||||||||||||||||||||| | ||||||||||||
Sbjct: 241 catttttatttattcccttttgtgtttgacatttttacaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 915
Length adjustment: 10
Effective length of query: 511
Effective length of database: 905
Effective search space: 462455
Effective search space used: 462455
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
