BAC Information

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BAC

Clone NameMSMg01-442P19
Chromosome3 (Build37)
Map Location 122,459,720 - 122,460,180
singlet/doubletsinglet
Overlap genePde5a
Upstream geneAbcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
Downstream geneLOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442P19.T7 (MSMg01no442_p19.b1)MSMg01-442P19.TJ (MSMg01no442_p19.g1)
ACCAG532501AG532502
length858802
length of high quality
(start - end)		54 (74 - 127)461 (78 - 538)
definitionCHROMAT_FILE: MSMg01no442_p19.b1 PHD_FILE: MSMg01no442_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:26 2005CHROMAT_FILE: MSMg01no442_p19.g1 PHD_FILE: MSMg01no442_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGA
ATTCAAGAAAATTTTCTCATTTACAATTACCTCTATGTGTGTATATTCTA
AGAGTGTGTGTGTGTTGTGTGTGCTTTAGAAGAATCTAACCAAAGACTTG
CCACACTTATATATTTGATTACAGAGACAATGAAGACATTTAATTGGAAC
AAGGCCCTCCTATTTTGATTGACCGCCTGGGTTAATATCGTGATAAGGCC
TAGCCTACTATAAGGTGATTCATTATTCCCCGCTCTCATCCCATTTTTAC
CCCCCCCCCTCACCGACCCTTATTTTTTTTTTTTACTTCCCCCCTCCCTC
TCTCCCCCCTAATTTCCTACCGCTCTTTCCCACCCTTTTACCACCCCTTT
ACTCTCATTTTTCTATCTCTCATTCCTACCCTTATTTCTCTCACATTTTT
CTTTTCCTTCTTTCCCCTTCCCCGCCTTTTTTATTCCCCCCTCTTTTTTT
TTCCCCCTCTTCCACACCCCTCTCTATTCCCCCCCCCTTTTTCCTTTTTT
CCCCACATCTCTCCCTTATTTTTCCCCTCTCTTGCCCATTCACTGCTCCC
TCGTTAATTCTTACCCTCTCTTTTTACTTTCTTTTATTCCCCTTCTTATT
TTTCCCTTCCCTCTCCTTTTTTTTGACTCCCCATTTCTTTCCCCCCTTAC
CTTCTTTTCCTCACACTCCTCCCCCCTCTTTTCTTTTACTCCCCCTCCTT
CCCTTTTTCCCTTTTTCTTTCCCCTCCCTTTCTTCTCTCACTTTTACTCC
TCCTTTTATTTTTTTCTCGCCCCTTTCTTTTTTTTTTCCTCCTTCTTCCC
CTCCCCTT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACACAAATGACAGAAAACAA
AAACAAAAGCACAGAAGAATCGCCAAGTAAGGCTCATTTTCTCCAAGAAT
GGCATTTTAAAGATAATGTCTAAAATTAGAGCCCTGACCATGGCCAGACA
GAGACACAGCAGTTCCCAGCCTGTGCTCCCCCGGGGCACAGTAACACTGC
AAGGGCCCACGATTTATCTAAATTGAAGCATCTGCTGGTGCTCTTTCCTT
TTCTAATATTTATTTTGGAAATAACTGTACTCATTAGGACTCCACCAGAG
AGACTTCCTACTCCTTTAAGAAAGGAACTTGATGAGTCCTTCAGTAGAGA
CTGAGGACCACAGAGTGAGAGAAGTTGATTTGTTCCTCTGGAAAAGAGGG
AAAGGGAAGGGCGAAGCAGATCTAAGAATTATGAAATGGTAACATGACTC
CTCATTAACACCATCTACACTCTACAGAAGTCAAGGGCCGAATAGTGTGG
NTGTCATATAAAAGCAGAACTTGCGTGCTTGCATTAGAGGCCATTCCGGA
GAGGAGCGGGGGGTTTTATCAATATAAAACCTTGCCACACTAAAAAAAAA
TCATTTGGGAGGAGGAGTAAAAACTTCTTTTCTAAAGGGAACCTCTCCCA
TGGGGACCCTGTGGAGGGGACCAACATATCTTTACTTGCGCTCAACACCC
CCCTTGTCGGTTTCTTTCTGTTCTTCTTCTTCTCCTCCTTCCTCCCTCTT
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_p19.g1 MSMg01no442_p19.g1 CHROMAT_FILE:
MSMg01no442_p19.g1 PHD_FILE: MSMg01no442_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:26 2005
         (461 letters)



>mm_chr3_122459520_122460380
          Length = 861

 Score =  868 bits (449), Expect = 0.0
 Identities = 458/461 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacacaaatgacagaaaacaaaaacaaaagcacagaagaatcgccaagtaaggctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaaacacaaatgacagaaaacaaaaacaaaagcacagaagaatcgccaagtaaggctcat 602

                                                                       
Query: 61  tttctccaagaatggcattttaaagataatgtctaaaattagagccctgaccatggccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttctccaagaatggcattttaaagataatgtctaaaattagagccctgaccatggccag 542

                                                                       
Query: 121 acagagacacagcagttcccagcctgtgctcccccggggcacagtaacactgcaagggcc 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 541 acagagacacagcagttcccagtctgtgctcccccggggcacagtaacactgcaagggcc 482

                                                                       
Query: 181 cacgatttatctaaattgaagcatctgctggtgctctttccttttctaatatttattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cacgatttatctaaattgaagcatctgctggtgctctttccttttctaatatttattttg 422

                                                                       
Query: 241 gaaataactgtactcattaggactccaccagagagacttcctactcctttaagaaaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaataactgtactcattaggactccaccagagagacttcctactcctttaagaaaggaa 362

                                                                       
Query: 301 cttgatgagtccttcagtagagactgaggaccacagagtgagagaagttgatttgttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttgatgagtccttcagtagagactgaggaccacagagtgagagaagttgatttgttcct 302

                                                                       
Query: 361 ctggaaaagagggaaagggaagggcgaagcagatctaagaattatgaaatggtaacatga 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 ctggaaaagagggaaagggaagggcgaagcagatctaagaatcatgaaatggtaacatga 242

                                                    
Query: 421 ctcctcattaacaccatctacactctacagaagtcaagggc 461
           ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 241 ctcctcattaacaccatctacgctctacagaagtcaagggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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