BAC Information

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BAC

Clone NameMSMg01-443A09
Chromosome3 (Build37)
Map Location 118,894,556 - 119,048,996
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443A09.T7 (MSMg01no443_a09.b1)MSMg01-443A09.TJ (MSMg01no443_a09.g1)
ACCAG532529AG532530
length716719
length of high quality
(start - end)
240 (77 - 316)249 (80 - 328)
definitionCHROMAT_FILE: MSMg01no443_a09.b1 PHD_FILE: MSMg01no443_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:29 2005CHROMAT_FILE: MSMg01no443_a09.g1 PHD_FILE: MSMg01no443_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,894,556 - 118,894,795)(119,048,751 - 119,048,996)
sequence
CCCCTCCTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAACC
GCGGAATTCTCTCTAAATACCCAAATAACTATTCCTATTTTGGTAGTGTG
GGAGAAATTATTAGAAAATATGTAAACAAGACCGGAAAACCTGGATCATT
AGGAAAGTCAAAGCTATTAAAAAGCTATCAGAAAAACGAGAACATTAAGG
CACAGACAAAGATATAGTATTTTATTTAAAGCCAAATTTTATATCAAACA
TGTGAGTAAATGAGGAAAGTATGAAGTTACTTAAGTGCACAAAATAGATA
ACATTATTTGATGATGTTATCAATCTTATAATTTTTGNTGTCTTGTATTA
GAATATTTACATAATAATGTTGGCCAGAAAATGTCTTAAAATTTCTCAAG
AATTTATTTCAGATTTTAGCTAGCTATGCTGATTATTACTAGTTGACTTA
GGTTATGCTGAAGATTAAGAGACAAATGTATATAAGTACATACATCAATG
CCACAGAACTTTAAGAAGGTCAAATTATGCAATCTCAAAATACAGAAAGA
TGATTTGATGCAATCACACCTATAAGAGAACTGCATGTTTTTAGGAAATT
AAACACACTTGAACAAATTCCAAATTTCTAAATAGTGAGCACTACACACT
CCCTTAAAGGAGTCTACCTATAGAAATCAAACTGAAAAAAATCTCTGACC
AATATTTCAAGTAAGT
TTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACATTACTCTGATTTAGAGATGG
CAGTGCATGGTATGAACATTTAATAACAACGTGGAATCAATCGAATCTTC
AAATTGTTTAAGTTCAGAATTTGAAGGTTTTCTACCTAAGTGTGTGTTCT
TTCTCTGAGGCTACTTCACAATCCTTCTCTTTGGCAGATGATGTTTGGAG
AATTCCATTTTGATTAATGGAGATCTCTCCTGTTTGGCGTTGGCTGCTGG
CTTTTTCATTATATAGAAATATCTATTTGTACTCTGTTCGGTCTAAATTG
GGGCTGGAGAAGTGGCTCATTGGCTAAGAGCACAAACTACTCTTGTACAG
GACCTAAGTTCAGCTCTCAGCACTCATATCATGCAGCTCAGGGCTACCTG
TAACTTTAGCTCCAGGATATACCGTGAACTTGGATTCATGTGAACAGATA
CACTCATACACATAATTAAAAATATAATGAATCTGTGAGTACATACTATT
CCTCTACCCCGCACTTTAGGGTTCTGGTTACCTCAGTCAAGATGGTATTT
TCTAGTTCCATCCACTTTCATGAGCGTCTATTATTTCAAATCACCAACTT
ATCCTGGACCTTTCTTTTTAAGCCCCACTTTCACTTTGCCCTTTTTTATC
ATGTTTTACTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_a09.b1 MSMg01no443_a09.b1 CHROMAT_FILE:
MSMg01no443_a09.b1 PHD_FILE: MSMg01no443_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:29 2005
         (240 letters)



>mm_chr3_118894356_118894995
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactattcctattttggtagtgtgggagaaattattagaaaatatgtaaacaagaccgga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 201 aactattcctattttggtagtgtgggagaaattattagaaaatatgtaaataagaccaga 260

                                                                       
Query: 61  aaacctggatcattaggaaagtcaaagctattaaaaagctatcagaaaaacgagaacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacctggatcattaggaaagtcaaagctattaaaaagctatcagaaaaacgagaacatt 320

                                                                       
Query: 121 aaggcacagacaaagatatagtattttatttaaagccaaattttatatcaaacatgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggcacagacaaagatatagtattttatttaaagccaaattttatatcaaacatgtgag 380

                                                                       
Query: 181 taaatgaggaaagtatgaagttacttaagtgcacaaaatagataacattatttgatgatg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatgaggaaagtatgaagttacttaagtgcacaaaatagataacattatttgatgatg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no443_a09.g1 MSMg01no443_a09.g1 CHROMAT_FILE:
MSMg01no443_a09.g1 PHD_FILE: MSMg01no443_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:29 2005
         (249 letters)



>mm_chr3_119048551_119049199
          Length = 649

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attactctgatttagagatggcagtgcatggtatgaacatttaataacaacgtggaatca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 446 attactctgatttagagatggcagtgcatggtatgaacatttaagaacaacgtggaatca 387

                                                                       
Query: 61  atcgaatcttcaaattgtttaagttcagaatttgaaggttttctacctaagtgtgtgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atcgaatcttcaaattgtttaagttcagaatttgaaggttttctacctaagtgtgtgttc 327

                                                                       
Query: 121 tttctctgaggctacttcacaatccttctctttggcagatgatgtttggagaattccatt 180
           ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 326 tttctctgaggctacttcacattccttctctttggtagatgatgtttggagaattccatt 267

                                                                       
Query: 181 ttgattaatggagatctctcctgtttggcgttggctgctggctttttcattatatagaaa 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 266 ttgattaatggagatctctcctgtttggcgttggttgctggctttttcattatatagaaa 207

                 
Query: 241 tatcta 246
           ||||||
Sbjct: 206 tatcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)