Query= MSMg01no443_b19.b1 MSMg01no443_b19.b1 CHROMAT_FILE:
MSMg01no443_b19.b1 PHD_FILE: MSMg01no443_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:36 2005
(276 letters)
>mm_chr3_82435602_82436277
Length = 676
Score = 223 bits (115), Expect = 1e-62
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 65 tccatacaggtctcaggtgcagagattgcaaccctgatggaacccagtttcagactgctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tccatacaggtctcaggtgcagagattgcaaccctgatggaacccagtttcagactgctc 320
Query: 125 tctgattgcaggttcttcccccgaacccgaagccacatgccctggggtgacatac 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctgattgcaggttcttcccccgaacccgaagccacatgccctggggtgacatac 265
Score = 134 bits (69), Expect = 7e-36
Identities = 72/73 (98%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 204 cctgtatggatagcaagagtggccagcagtcaggtgcgtgaagtgtgcacctgtcacctc 263
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 370 cctgtatggatagcaagagtggccagcagtcaggtgcg-gaagtgtgcacctgtcacctc 428
Query: 264 agcagctaggagc 276
|||||||||||||
Sbjct: 429 agcagctaggagc 441
Score = 99.3 bits (51), Expect = 2e-25
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 5 gaattctactcttct-tccccacagacatctcctcctcatgtgggttgtggtaatcaaaa 63
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 gaattctacccttccctccccacagacatctcctcctcatgtgggttgtggtaatcaaaa 216
Query: 64 gtc 66
|||
Sbjct: 217 gtc 219
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space: 178089
Effective search space used: 178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no443_b19.g1 MSMg01no443_b19.g1 CHROMAT_FILE:
MSMg01no443_b19.g1 PHD_FILE: MSMg01no443_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:36 2005
(397 letters)
>mm_chr3_82592579_82593375
Length = 797
Score = 690 bits (357), Expect = 0.0
Identities = 387/397 (97%)
Strand = Plus / Minus
Query: 1 aatacaaggggcaaaactgcattgcacatatgttggtgctgttgacttaacaaaacaagt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 597 aatacaaggggcaaaactgcattgcacatatgttggtgttgttgacttaacaaaacaagt 538
Query: 61 ttagactttgaaagattagggatagtatagtgttcaattctgagttagaggtggtatgga 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 537 ctagactttgaaagattagggatagtacagtgttcaattctgagttagaggtggaatgga 478
Query: 121 aacgatgatatttaagctaataatttgagtttaggtttttaacagtattgttggctcatg 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aacaatgatatttaagctaataatttgagtttaggtttttaacagtattgttggctcatg 418
Query: 181 gacaccactcattgcacaaatggcaaagattgcacatttgtctatgctctcatactgcat 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 417 gacaccactcattgcacgaatgacaaagattgcacatttgtctatgctctcatactgtat 358
Query: 241 gaccctgttctctgtagtttatatttaggaaagtagccatatccttatgaacccaaaaac 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gatcctgttctctgtagtttatatttaggaaagtagccatatccttatgaacccaaaaac 298
Query: 301 tccaaggtgagttctctttgtaatagggcaactacctttataaatagcaaaagagaaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 297 tccaaggtgagttctctttgtaatagggcaactacctttataaatagcaaaagagcaggt 238
Query: 361 cttagttgtagaaagagaaagacagaaaatgagaatg 397
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 cttagttgtagaaagagaaagacagaaaatgagaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
