BAC Information

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BAC

Clone NameMSMg01-443C09
Chromosome3 (Build37)
Map Location 23,994,463 - 23,994,707
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443C09.T7 (MSMg01no443_c09.b1)MSMg01-443C09.TJ (MSMg01no443_c09.g1)
ACCAG532624AG532625
length725741
length of high quality
(start - end)
173 (81 - 253)244 (84 - 327)
definitionCHROMAT_FILE: MSMg01no443_c09.b1 PHD_FILE: MSMg01no443_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:39 2005CHROMAT_FILE: MSMg01no443_c09.g1 PHD_FILE: MSMg01no443_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAACC
GCGGAATTCNCACCTGATGACTACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAATATCCTTAATCATCTTGGACATGCAAATCAAAACAACCCTGA
GATTACACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGAAGATGCTGGCGTGGATGTGGACAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGTAGGATTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCC
TCAGAAAATTGGACATAGTACTATTTTTTTTTTCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCTCCTCTGGTAAGAATGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTCACAATAGCCAGACGCTGGATAGAATCCC
CACGCCCTTCATTAGATGAATGGATACCGAAAACGTGTTACATCCCATTT
ATTGTAGTACTACTTTTCTTCTTAAACCAGATTGATTCTCATTATTTTTT
TATCCCAATGGTTGTGACCCGTACGCTTTCACCCTTCAGTGATGTAACTT
ATTTCTCTATGGAACCCCCCCTTTTTTTTTTTTCTTTGTCCACCCCGCTC
ACTATTCCCCAACTTTTACGTTATCCCTACATATAACGACACCATTTTCG
CCACTACCTTTCTTTTTCCTTCCAG
CTTTTTCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCCGCAATCAGTAATGTATTTGGACTATA
CAATGACAGAGAAACAGGAATGAACTTGAGTCAGTCTAAGGCTTCTTAAC
CAGTATTTCTGTGCAGAGAGGTTTAGGTGACACATCATATTGATAGAACC
TTTGCTCATCAGAATATGCTCTTTGAAGGGACATTTATAATTTTTTTAAA
ACATTGGATTTATGGCATTTTGTTTAGAAGAAATATAGCCAGGTGATTTT
CTTTTCAAATACAAGAGTATCAAAGTATATTATAAAGAACAGGGAGAATG
CAAGCTTCCTCAGAATGAGTTTTGCAGAGGAAGACGAACTTGGGATAATT
AGGAGTTGGACATTTTTAAAAAGTCTTTTTAATCAGAATCTGTTTGATGT
GTTTGCATGTGTGTGTGTGGGTGCGCGCGTGTTGTTCATTTCCCTTCTTT
CTCTCCAATCATTCTTTTCCCTTTTTGGCGCTTGTTTTTGCAATTTCCCC
CCTTTCACTTTTGTTTCCCTCTTGACCCTTTTCTTCCCTTTTTTTTCCAC
CTATTTACCCCCCATCCTTGTCTCATTTTATTCTTTTTGCCCCCCTCCTT
CTTTTTCGCCCCCCCCCTTTTTATTTTTTTCTCCCCTTTTTTCCCTTTTT
CCCTTTTTTATTCTTCCCTTGTTACTCCTCTCTTTTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_c09.g1 MSMg01no443_c09.g1 CHROMAT_FILE:
MSMg01no443_c09.g1 PHD_FILE: MSMg01no443_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:39 2005
         (244 letters)



>mm_chr3_23994263_23994907
          Length = 645

 Score =  389 bits (201), Expect = e-112
 Identities = 234/245 (95%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtatttggactatacaatgacagagaaacaggaatgaacttgagtcagtctaaggct 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgtaattggactatacaatgacagagaaacaggaatgaacttgagtcagtctaaggct 386

                                                                       
Query: 61  tcttaaccagtatttctgtgcagagaggtttaggtgacacatcatattgatagaaccttt 120
           ||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||
Sbjct: 385 tcttaacaagtatttctgtgcagagaggttcaggtgacacatcacatggatagaaccttt 326

                                                                       
Query: 121 gctcatcagaatatgctctttgaagggacatttataatttttttaaaacattggatttat 180
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 325 gctcatcagaatatgctctttgaaggaacatttataatttttttaaaacattagatttat 266

                                                                       
Query: 181 ggcattttgtttagaagaaatatagccaggtgatt-ttcttttcaaatacaagagtatca 239
           ||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 265 ggcgttttatttagaagaaatatagccaggtgattctttttttcaaatacaagagtatca 206

                
Query: 240 aagta 244
           |||||
Sbjct: 205 aagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 645
Length adjustment: 9
Effective length of query: 235
Effective length of database: 636
Effective search space:   149460
Effective search space used:   149460
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)