CCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACCGAGGAGG
GGCGGAATTCTTTGTTATACCATAAGACCGACTTTTTAATGGGGTTATTT
GATATTCTGGAGTCCACCTTCTTGACCTCTTTATATATATTGAATATTAG
TCCCCTATCTGATTTGGGATAGGTAAAGATACTTTCCCAATCTCTTGGTG
GTCTTTTTGTCTTATTGAAGGTTTCTTTTGCCTTGGAGAACCTTTGCTAT
TTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAAGCCATTGC
TGTTTTATTCAGGAATTTTTTCTCCTTATTCATATATNCGAGGCTTTTCC
CTACTTTCTCCTCATTATGTGTCAGTGTCTCTGGTTTTCTGTGGAGTTCT
TTAATCCACTTAGATTTGACCTTAGTGCAAGGATATACGAATGGATCATA
TCACATTCTTCTACATGAAAACCTCCAGTTGTGTCAGCAACATTTGTTGA
AGATGCTGTCTTTTTTCCACTGGACGGATTTTGCTCCCTTGTCTTAGATC
AAGTGACCATAGGCGTGTGGGTTCATTCCTGGGTCTTCAGATCTATTCCA
TTGCTCTTACTGACTGTCACTACACCAGTACCATGCAGAATTTATCACCT
CTCGTTCTGCTTTACTGCTTTATTTTTTCCTTGGTGTTTCCCCCTTAGGC
TCTTTTTATCTCG

NTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTAAAGGTGATTGCAAA
ATATTTGTTTCTTTTCATATAATCATATAATAAATATAAAATATTATTTT
TATAATAAATGTATGCTAGTGGTAGCTTTCTAATATCATATGAATAATTT
TTACTTTTCTAGCATAAATGAAATATTGTTTAATAGAGACCAATGTTAAT
GAACAATGAGAAGAATTTTGTTATAGTTTGAAATATATGGAAATACCTTT
AAGGTTTAATCATCATTCCATTAAGGAAAGATTTAAAATGTTTCAAAATA
TGCACAGAAAGAATGGGACCGTCCTCTGATTTCTGTCTTCTAATTTCTTA
CAGTGACAATTTGCAGCTGAGCCACCTGAGGTCACTTTGCACTAGGAAGC
AGGGAAGACCTTACTAACTCATTTTAATATTAATGGCATTCATCAAGCTG
CAAAATAAATGTGCAATAGAATGTTTCTGCTTAGCTTATGTTGCTTGCAC
TTCCTGTCTTCTCAACATGTTTCTTCCATCTTGCTCAGAACTTCAGAGAA
TTCAATTCTTCCATTCTGAGGTTATCTCTAGCCTGCTGTGTGATGGTTAT
ATAAAGTCTATATAGAGCAAGATAATCTTTAGGGTATTCGTGGCAGAAAC
GCGCGAATTTCTCTTCTCCCTCCC

Query= MSMg01no443_e04.g1 MSMg01no443_e04.g1 CHROMAT_FILE:
MSMg01no443_e04.g1 PHD_FILE: MSMg01no443_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:48 2005
         (517 letters)



>mm_chr3_3952142_3953063
          Length = 922

 Score =  940 bits (486), Expect = 0.0
 Identities = 511/522 (97%), Gaps = 5/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatttaaaggtgattgcaaaatatttgtttcttttcatataatcatataataaatataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatttaaaggtgattgcaaaatatttgtttcttttcatataatcatataataaatataa 260

                                                                       
Query: 61  aatattatttttataataaatgtatgctagtggtagctttctaatatcatatgaataatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatattatttttataataaatgtatgctagtggtagctttctaatatcatatgaataatt 320

                                                                       
Query: 121 tttacttttctagcataaatgaaatattgtttaatagagaccaatgttaatgaacaat-- 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 321 tttacttttctagcataaatgaaatattgtttaatagagaccaatgttaatgaacaatga 380

                                                                       
Query: 179 ---gagaagaattttgttatagtttgaaatatatggaaatacctttaaggtttaatcatc 235
              ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 381 aaggagaagaattttgttatagcttgaaatatatggaaatacctttaaggtttaatcata 440

                                                                       
Query: 236 attccattaaggaaagatttaaaatgtttcaaaatatgcacagaaagaatgggaccgtcc 295
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attccattaaggatagatttaaaatgtttcaaaatatgcacagaaagaatgggaccgtcc 500

                                                                       
Query: 296 tctgatttctgtcttctaatttcttacagtgacaatttgcagctgagccacctgaggtca 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgatttctgtcttctaatttcttacagtgacaatttgcagctgagccacctgaggtca 560

                                                                       
Query: 356 ctttgcactaggaagcagggaagaccttactaactcattttaatattaatggcattcatc 415
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ctttgcactaggaaacagggaagaccttactaactcattttaatattaatagcattcatc 620

                                                                       
Query: 416 aagctgcaaaataaatgtgcaatagaatgtttctgcttagcttatgttgcttgcacttcc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagctgcaaaataaatgtgcaatagaatgtttctgcttagcttatgttgcttgcacttcc 680

                                                     
Query: 476 tgtcttctcaacatgtttcttccatcttgctcagaacttcag 517
           ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 tgtcttctcaacatgtttcttccatcttgttcagaacttcag 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 922
Length adjustment: 10
Effective length of query: 507
Effective length of database: 912
Effective search space:   462384
Effective search space used:   462384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)