BAC Information

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BAC

Clone NameMSMg01-443I23
Chromosome3 (Build37)
Map Location 110,493,465 - 110,494,001
singlet/doubletsinglet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443I23.T7 (MSMg01no443_i23.b1)MSMg01-443I23.TJ (MSMg01no443_i23.g1)
ACCAG532937AG532938
length730735
length of high quality
(start - end)
298 (329 - 626)537 (75 - 611)
definitionCHROMAT_FILE: MSMg01no443_i23.b1 PHD_FILE: MSMg01no443_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:12 2005CHROMAT_FILE: MSMg01no443_i23.g1 PHD_FILE: MSMg01no443_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAACACCGCGGA
ATTCTCCACTATTTACTCTAGACACTGAGCTCTTTTTTTTTTTCTTGGTT
GGAAGACTATTAATGACCTCTTCCATTTCTTCATGGGTTATTGGGCTGTT
TAGATCATTTATCTGACACTGTTTTAACTTTGGCACCTGGTATGTGTCTA
GAAAATTGTCCATTTCATCCAGATTTTCCAATTTAGTAGAGTAGAAACTT
TTGTAGTAGGATCTGCTGAATTTTTGGATTTCCACAGTTTCTGTTATTAT
GCCTCCCTTCTTGTTTCTGAATTTATTAATTTGGATATTGTCTCTGTGCC
CTCTGATTAGTATAACTAACCATTTGTCTATTATGTTAATTTTCTCAAAG
AAAGCAACTTCTGGTTTGTTGATTCTTTGTATAGTTCTTTTTGTTTTTAT
TTGGTTGATTTCAGGCTTGAGTGTTATTATTTCCTGTTGNATACTCCTCT
TGGGTGNATTTGCTTCTCTTTTTTTATTATATAATTTCCTTATTTACATT
TCAAATGTGATTCCCTTTCCTAATTTTCCCTCCAAAGCCACCTCTCCTAT
CCTTTTCCCCATCCCTCTGCTCCCCAACCCCCCCACTATCATTCCTGGTC
CTAGCATTCCCTTATACTGCGCGAAAAAACCTTCCCAGGATCTAAGGCCT
CTCTTCCCCTTGATGATCGACTTCGCCCCG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGGGGGTGCAGGTTATAAAAAACA
CTACAGCAAGGAGTTACCCGAAAAGCATGCGTTCTTAAGATAGAGGGACC
GTTTGCCAGGGCCTTGCATGGGTGTAGTACTCGAAGTGTTAGGCCACACA
GTTCTCTTTTTGAAGAGATTATTAATGTGCCTCACGTATCCTCTCAACCA
GCTCAGCAGAAACCTAGACAGGTCTGTCGAGAAGCCTTTCATCTGGTAGA
GAGAATCCTTGCGACAAACACAATATATCCAAAGGGGCTTAAAAATATTA
AATCAGCAGAAATAGTGTCAGCTTAGTACAAAAATAGCAGAGAGAGAAGA
GAAATGAGAGGATACCTTTGGAAGTCCAGCATCCCACAAGAAATACGTGG
GCTTATAAAACGACTTAGGCACAAATGCATGCTTCCTTTGTTTATTTATT
TTTTAAAGTTAGAAGTTAAAAGCCAGGCACTCACTCATATTATACCACTG
AATCGTTAGTTTTAACTCATGAATCTTGGGGGTCCATTTGAAATACAATC
TATATGCATATGGAAGTATTTAAAAAATTATGACAGGGACTGGGGATATA
GCTGCATGATAGATCACTTGCCCCGTACTGGGAAGGCCCTGTGTTCCCTT
TCCCCAATTTTTTATTCCTTTGTACCTTCTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_i23.g1 MSMg01no443_i23.g1 CHROMAT_FILE:
MSMg01no443_i23.g1 PHD_FILE: MSMg01no443_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:12 2005
         (537 letters)



>mm_chr3_110493265_110494201
          Length = 937

 Score =  992 bits (513), Expect = 0.0
 Identities = 531/537 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgggggtgcaggttataaaaaacactacagcaaggagttacccgaaaagcatgcgttc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 201 tctgggggtgcaggttataaaaaacactatagcaaggagttacccgaaaagcatgtgttc 260

                                                                       
Query: 61  ttaagatagagggaccgtttgccagggccttgcatgggtgtagtactcgaagtgttaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagatagagggaccgtttgccagggccttgcatgggtgtagtactcgaagtgttaggc 320

                                                                       
Query: 121 cacacagttctctttttgaagagattattaatgtgcctcacgtatcctctcaaccagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacagttctctttttgaagagattattaatgtgcctcacgtatcctctcaaccagctc 380

                                                                       
Query: 181 agcagaaacctagacaggtctgtcgagaagcctttcatctggtagagagaatccttgcga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagaaacctagacaggtctgtcgagaagcctttcatctggtagagagaatccttgcga 440

                                                                       
Query: 241 caaacacaatatatccaaaggggcttaaaaatattaaatcagcagaaatagtgtcagctt 300
           ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaacacaaaagacccaaaggggcttaaaaatattaaatcagcagaaatagtgtcagctt 500

                                                                       
Query: 301 agtacaaaaatagcagagagagaagagaaatgagaggatacctttggaagtccagcatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtacaaaaatagcagagagagaagagaaatgagaggatacctttggaagtccagcatcc 560

                                                                       
Query: 361 cacaagaaatacgtgggcttataaaacgacttaggcacaaatgcatgcttcctttgttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 cacaagaaatacgtgggcttataaaacgacttaggcacaaatgcatgcttcctttgtttt 620

                                                                       
Query: 421 tttattttttaaagttagaagttaaaagccaggcactcactcatattataccactgaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttattttttaaagttagaagttaaaagccaggcactcactcatattataccactgaatc 680

                                                                    
Query: 481 gttagttttaactcatgaatcttgggggtccatttgaaatacaatctatatgcatat 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttagttttaactcatgaatcttgggggtccatttgaaatacaatctatatgcatat 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)