BAC Information

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BAC

Clone NameMSMg01-443K09
Chromosome3 (Build37)
Map Location 49,339,360 - 49,339,555
singlet/doubletsinglet
Overlap genenone
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579
Downstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11, EG621304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443K09.T7 (MSMg01no443_k09.b1)MSMg01-443K09.TJ (MSMg01no443_k09.g1)
ACCAG533005AG533006
length720729
length of high quality
(start - end)
187 (132 - 318)198 (126 - 323)
definitionCHROMAT_FILE: MSMg01no443_k09.b1 PHD_FILE: MSMg01no443_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:18 2005CHROMAT_FILE: MSMg01no443_k09.g1 PHD_FILE: MSMg01no443_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATCTATAATTTGTGGCCGCTAAACGANNCACTATAGTACGTACCTGG
GCGGAANNCNGCCAAATTACCAGAAAATCTGTCCCAANTATACATTCTGG
GTCTGGAAAAACATTAATGAGTTTAGCACTCCACTCAACCTACTTAGACT
CAGATTTCAGTGATAGCTCTATTAATCACATATATCCTTAGTTTAACTGG
AGTGTCACAATGTTTCTTGAGATTTCTCAAAATCAGGATCAATTTAGAAT
AAATTTTTTAAATTCTGATTGTTTCCTTTTCACCAGTAGGAAGTTATCTT
TGTCAAAAGCTGTAGGTTCCTATTTTTATTTATTGGGAAAAGACCACCAG
AAAAACTTTTAGGTAATTTATCAACCCCCTTCTTCTGGGAACTTGCTCCT
TCCTTCATTGAGGGGATCTGGCTCTGCCAACTGGCTCAAGTTTGCCAACT
GCTTCCCACGCTGAGACTCTCCTTTCATCATGATCCACTGCAGTCTTTCT
CTCATTTGTTTGATAACTTTCCTACACATACTCACGATTTTACAACGCTT
TATTCTTCTCATGCATTTTATGCCTTCCAACTTTGCCATGAATTATTTAG
ATACTAACGTCCATAAAGTCCTGCTTCTCTTTTTTTTTTTCCTACCCCTT
CTTATTTTTATTTATCCCACTTATACGGTTTTTTGCTCCGCTTATGTCGA
TCCCTGATTATTTTCTTCAG
TTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAAAAAAGCGTTGTTATATGNAGAACTCACCT
CCTTTCTGCTATTAGAATTCTAATTTCTTATTCTTCTTTAAACCTCTCAA
CTTTTTAATATAAGGTTATAGATTTCTATTAAACTCTTTTTTCTCATGCT
TAAATTACTTTGTTTGAATTACTAATTATATCCTATCTGCCTTGCCAATG
ATAAATCTTGTATTCTTTTTATATGTTAGTCATTAAAGCATTTCAATTGT
TAAAACTAAATATTACAGTTGTATTTTTTTACATATTTCTTCACAGATAC
TTTCGAACTCTATCAACCTTATAGGTCAATCTGAGATCTTAACCTCCTCA
TAATATAATGTACAAGATTTTGGACACGCTTTTAGTCTTTAAAATGTTTC
CTTCAATTAAGCCATTTACTCACCCATTTATTTATTTACCTATTTATTTA
TTTAATTAATTATCCGATTGGCGGCTTTCTTTTTTCTTTTTCCCCCTTTC
CTTTTTTTCTTTTTTTTTCCTATTCCTTCACTTTTCTTTATTTATTTTTC
CACCCTTCCTTCTCCATTTTTTTTTTTCCCCCGCCCCTTCTTTTCTCTCT
CCCCCTCTTTTTTTATTTTCTCCCCTTTTTCCCTTTTACCCCTTTTTCTT
TTTCCCTTTTTATCACTCTCTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_k09.g1 MSMg01no443_k09.g1 CHROMAT_FILE:
MSMg01no443_k09.g1 PHD_FILE: MSMg01no443_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:19 2005
         (198 letters)



>mm_chr3_49339160_49339757
          Length = 598

 Score =  379 bits (196), Expect = e-110
 Identities = 196/196 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttattcttctttaaacctctcaactttttaatataaggttatagatttctattaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttattcttctttaaacctctcaactttttaatataaggttatagatttctattaaact 260

                                                                       
Query: 61  cttttttctcatgcttaaattactttgtttgaattactaattatatcctatctgccttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttttctcatgcttaaattactttgtttgaattactaattatatcctatctgccttgc 320

                                                                       
Query: 121 caatgataaatcttgtattctttttatatgttagtcattaaagcatttcaattgttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgataaatcttgtattctttttatatgttagtcattaaagcatttcaattgttaaaa 380

                           
Query: 181 ctaaatattacagttg 196
           ||||||||||||||||
Sbjct: 381 ctaaatattacagttg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)