BAC Information

Click to search

BAC

Clone NameMSMg01-443K12
Chromosome3 (Build37)
Map Location 47,502,553 - 47,502,679
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443K12.T7 (MSMg01no443_k12.b1)MSMg01-443K12.TJ (MSMg01no443_k12.g1)
ACCAG533011AG533012
length741742
length of high quality
(start - end)
195 (129 - 323)128 (131 - 258)
definitionCHROMAT_FILE: MSMg01no443_k12.b1 PHD_FILE: MSMg01no443_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:19 2005CHROMAT_FILE: MSMg01no443_k12.g1 PHD_FILE: MSMg01no443_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGC
GCGGAATCCATAATTAATTCCACAAAATTTGACTCACTCATTAGGGNAAA
GAATTGTCACTTTTATAGTCATCTATAAACTTCAAATGTACTATTTTTGA
AAGGCTTTCTTTGCATATGACCAAGAGGCAACATAGATTATTTTCTATAG
CTATCATTATAGTTAAGCAATATTTGTTGAGGTTTGGTCTGTTGCTATGT
GTTTTAATGTCTAATGCAGGCCACCATACCTGGTTTCCCCAGAGAAATTG
CATGTAGGCCTCTAGGGATACTATGTTTTTATGTCAACAGTCAATAGCTG
CGGCCTATTAGATTCAGTTGTGGTTCCCAGTTTCCCAGGTTTTGGTAAGA
GGACAACCTGTTATTGCACCATCCATTTGCTGTATATATTGCCACCTTTG
CCCTTTTTAACCTTAATACTAACACCTTTCGTTTATTGCGCTTTACTGTC
TTTTAACCTCCGCCCACAAATATCCCCGACTTACCTATTTAATTGGGTAC
TTATCGGTTGGATTAATTAGCGTTTAGCTACCCTCCCTCTTTTTCTAAGG
CCCCGTTTTTTAATCAACATGTTTTGGTTGGTCTGACCCCCTTTGGCCTA
ATATGGTTCTGTCTTTTACTTTCCCCCTTTGCGGCCACCACAACATTTCC
TCTTTTTCCTTTTCCCCCTCTTTTTCCCTCGCCTTTCACCG
TTTCCGATGCAGCGGGTAGNCTGGNGGNCGGCGGGNCGTACCGACTGGGN
GAANTANAGAAGGATTGCCAAAAAACGTGTACTTCACAAGGACATAGGNA
TAGACATACAATAGTCATATTCTGACCCATTTATAAATTCCTGAGGGGCC
TTGTAAGCCTTGGAATGGGAGAGTGATGGGAAGTGTGAATGACATAGGCA
CAGTGTTCACATATAAATTTCTCAACCTAAATCCACTAAAACATAAAATA
TGAAAATCTTGAACAAGGAAAGGAAAAGAAAGCAGATTGCTTCATAATGA
ATAACCACCTATACATTCAGTATTTTATATTTTTGGCAACGACAGGGAAT
ATAAAGCATTTCAATATTATAAAGCACATTCACCATCAAAAGCATTGTAC
AAACTGAAAAATATAGAGGAATAATCATCATGCACAAGACGGTTCATATC
AACTTCTTTCTGTATCTCATAAGCCAAAGACAAAAGATTATATACCGGAG
ATATTATGGGAGATTCGTGTACCCGCGCCGGATGCCTCCATTTCTGCTTC
CCCCCCGTTTTTGTTTTTTCTCCTTTCCTCGCTCTCATGACTTCTCTCAC
TTCCCCCTCCTTCCCCCCCTTCCTTTCTCGCCCCCTTTCCCTTCTTCTCA
TTCCCTCTCTTTTTTTTTTTTTGGTACACTCTCTCCAATTTTACCTTTCT
TTTATTCCCATTCCCCCCTATTTTTTTCTCCCTTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_k12.g1 MSMg01no443_k12.g1 CHROMAT_FILE:
MSMg01no443_k12.g1 PHD_FILE: MSMg01no443_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:19 2005
         (128 letters)



>mm_chr3_47502353_47502879
          Length = 527

 Score =  232 bits (120), Expect = 5e-66
 Identities = 126/128 (98%), Gaps = 1/128 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttataaattcctgaggggccttgtaagccttggaatgggagagtgatgggaagtgtgaat 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ttataaattcctgaggggccttgtaagccttggaaggggagagtgatgggaagtgtgaat 260

                                                                       
Query: 61  gacataggcacagtgttcacatataaatttctcaacctaaatccactaaaacataaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gacataggcacagtgttcacatataaatttctcaacctaaatcca-taaaacataaaata 319

                   
Query: 121 tgaaaatc 128
           ||||||||
Sbjct: 320 tgaaaatc 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 527
Length adjustment: 8
Effective length of query: 120
Effective length of database: 519
Effective search space:    62280
Effective search space used:    62280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)