BAC Information

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BAC

Clone NameMSMg01-443N04
Chromosome3 (Build37)
Map Location 84,406,183 - 84,406,547
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4
Downstream geneTmem154, LOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443N04.T7 (MSMg01no443_n04.b1)MSMg01-443N04.TJ (MSMg01no443_n04.g1)
ACCAG533137AG533138
length711727
length of high quality
(start - end)
60 (254 - 313)367 (82 - 448)
definitionCHROMAT_FILE: MSMg01no443_n04.b1 PHD_FILE: MSMg01no443_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:32 2005CHROMAT_FILE: MSMg01no443_n04.g1 PHD_FILE: MSMg01no443_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAACTAAATTTGCGGCGCTAANAGAACACTAATTCCGACCGGCGCGGA
ANCACNNCCTTACGNAACTGCGGCANGNNGGNCNGAGGNGNGACAGAGAA
ANCNGGCNCACACTGCACACGAAGAANNCAAGCNAGACGGGCAAAGACGG
CNGAACCTCACTCCATGGCGCGAAGCCNGANCCGNGAAGNACCGAAAAGA
GACCNCAGNNCCNCGGCACCNGGGCNCGGGCGCCANNCCCACAGACTTTT
TTTTATGGAAAAGACACCACAGGNCCTGTGCCACGCTCTGCAGACCCCAC
CTGGCCTGGCTGATTTTTTTTACAGCCAAGGCACNNGAGNGGACCAGGAG
CCAGGCTCCATACGCCACCCCNGANNACGANNCCGCNCCCCGGGCGGAGG
CACGCGCCACGGAGCACCCGAAGAGAAAGACNCCCAAGAGGCCCGAACAA
ACCAAACGGAGCCCCCACCCAACACCGACGAGACGGCCCCAAGCCGGAAG
AGCAGCCCCGACCCCCCGAAGAGACGAGCAAAAACGGCCAAACCCCCGCC
ACAGCGCAGNACCCCGCACCCAAGCGACGCCCACCCAAGGNGACCACACG
CCCGCCCAACCCGCCAACACAAAACCCCACCCCCCACACGCGCACCTTTT
TTTCCCCGCACACCGCCTACGCGCCCTGGGCCTGTATCTCCTACCCTCTT
TCTTCCCCCCC
TTCTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAAATTAAAGTTGCAT
GAGGGGATCTGCCTTCAAGCTCTGTCCCACAGATGTTGTTGCTTCTGAGG
CAGCTCAGACGAGAAGCAAGAAATAACAGGAGCCATCTTGCCTGGCAGCT
ATTCCTTAAAGTGCTTAATATAAATTTGTAGCTCCCCAAAATAATTTTCT
TGACCTCAGTGCTCTTTTGGACTCCTATTTCCAACTTAATCCTTTCATCC
CACCCCACCCTAGATATATTTGACAGGCCTGGGCTCAGGCCTAACTTTCC
TTTCTTGTCTGTGTATCTTTGTGAAGGTCACATGCACACTTGGAATGGAA
GGGTGATCCCCCCCCCCTCGCCTGGCTGGTACTTTATGAGATCAAGGTGG
GGCTTTAGAGATTTATCTACAACACAGACAAAACCATGAATTTCCTTCTA
TGATTTACAAGTGGCAATTTCAAAGAGAATGTACACTCTTCCTGTTCTGC
AAGGCCCAGAAAGTACTAAATGAAACCCTGCACAAATGTTGCTGAAGTGC
CCTGACCCCGCCCGCCCGTCTTGGTCCCGCTGTCAAGATCCGGCACACTG
TTCACTGCTTGTTTTGCCCTGAGCTGTTTCAGATTGTTTTCTCTTGTTTT
CCCCCCCTTTTAACCCTTATTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_n04.g1 MSMg01no443_n04.g1 CHROMAT_FILE:
MSMg01no443_n04.g1 PHD_FILE: MSMg01no443_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:32 2005
         (367 letters)



>mm_chr3_84405983_84406747
          Length = 765

 Score =  690 bits (357), Expect = 0.0
 Identities = 364/367 (99%), Gaps = 2/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggaaattaaagttgcatgaggggatctgccttcaagctctgtcccacagatgttgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctggaaattaaagttgcatgaggggatctgccttcaagctctgtcccacagatgttgttg 506

                                                                       
Query: 61  cttctgaggcagctcagacgagaagcaagaaataacaggagccatcttgcctggcagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttctgaggcagctcagacgagaagcaagaaataacaggagccatcttgcctggcagcta 446

                                                                       
Query: 121 ttccttaaagtgcttaatataaatttgtagctccccaaaataattttcttgacctcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccttaaagtgcttaatataaatttgtagctccccaaaataattttcttgacctcagtg 386

                                                                       
Query: 181 ctcttttggactcctatttccaacttaatcctttcatcccaccccaccctagatatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcttttggactcctatttccaacttaatcctttcatcccaccccaccctagatatattt 326

                                                                       
Query: 241 gacaggcctgggctcaggcctaactttcctttcttgtctgtgtatctttgtgaaggtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacaggcctgggctcaggcctaactttcctttcttgtctgtgtatctttgtgaaggtcac 266

                                                                       
Query: 301 atgcacacttggaatggaagggtgatcccccccccctcgcctggctggtactttatgaga 360
           ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct: 265 atgcacacttggaatggaagggtgat--cccccccctcgcctggttggtactttatgaga 208

                  
Query: 361 tcaaggt 367
           |||||||
Sbjct: 207 tcaaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 765
Length adjustment: 9
Effective length of query: 358
Effective length of database: 756
Effective search space:   270648
Effective search space used:   270648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)