BAC Information

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BAC

Clone NameMSMg01-443O07
Chromosome3 (Build37)
Map Location 101,153,038 - 101,153,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490
Downstream geneIgsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443O07.T7 (MSMg01no443_o07.b1)MSMg01-443O07.TJ (MSMg01no443_o07.g1)
ACCAG533190AG533191
length738743
length of high quality
(start - end)
60 (260 - 319)274 (94 - 367)
definitionCHROMAT_FILE: MSMg01no443_o07.b1 PHD_FILE: MSMg01no443_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:38 2005CHROMAT_FILE: MSMg01no443_o07.g1 PHD_FILE: MSMg01no443_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTCAATTAATCCTAATGTCAANAAANGANNNANTAATTTCCGACCA
GGGNGGNAANNNANNTTTTACCAAACAAGCGCAGACNCANCNGGACCANC
NNCCCCTCCGGGCCCCNTGCCATCACTCCCATACACTGATCTCATCTTAG
AATTAAAACACTTTGGCCTCATCAAGTGCAAAGTCTATGGTGCAAGGTGG
GGCAGGCCTCCAGGATGTGTCTCACAGCCTGTCCAAGGCCATAGTAGGTC
AGTTCTTTGTTGCCCTCTCTTTCCCTACATCTTTGGTAAGGATGGTCCCA
CCCAACCCANCAATCCTGATATTTTTTTTGTGCCGAAGCCACAGCAGCAC
CTCAGACGGGGAAGCTATTTCTGCCCTTCCGATAATAATCTTTAAGGCTT
TTTTGGCCACTGTGATAGGTTCCCTAGCACCCCTTTTAGATTAACAGATG
GAACACGTGTCCTATTTGTGTTATATTGCCCAGAGCCCTGTCGAATGATA
TAGGTACTTACATCCTTTATCCCTGCCCCACCTTCTTCCCGATTATTTTT
ATCGACCAATCACTATTATTCCTCTGACATTTGCCCCTTTCCCGTTTACA
CTTGAATGCTTTTTAGAACAAGCCCTTTTTATTTTTTTCTTTTTACCACC
CCCCTTCCCTCTTTGTTTCTTTTTTCCGCCCTTTTGGCCTTTTTTTCATC
CCCATTTCTTGCCACTACGTTTCTTTATTTCATTCCCC
ATTTTTCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCGAGAACATCTGTAGGNGGANGAATTAGG
CACTAGTCTCTCGGTTAGAGATGGGATCCCGAATCCCAGAGTAAGCAGGA
CCTCTTTTGAGCAAGGATCTGCGAGAGGTGACTTCATATACGTTTCCCCC
GGTAATTCTTACTATGTGCATAGAAGATGAATAAGCTCACTCCTGTTTAC
AATATGATTGTCAAGGCTGTAAGTACCAAGGGACTGACTGCATCACACAC
TGAAAGTGGCAGAGCTGGGCTTTGTAATCCTTTGTCTTCTGGCTGGGGAG
CCCATATCGTTCCCTCTTCTCACTACGAGTATATCAATGTGTAGGAAACA
CAAATAGATTGACCCAGTGACTGACTGGTGAGAGAGAACACACCTCGTTG
GGAATAGTAGGCACGAGGGGAACATGTTCACGTGAGTGTTTGTAGGTTAC
GCGCCGAGAAGAGAGAACGCATGTCATACCTGAAATATCAGTGGCTTTCA
ATTGAATGGCCCCGTCCTATGGGTCCCCATTTCCCAAGCTTTTCTCGTTT
AAACCACCCTTTGAAGTCCACTCATATCCTTAAATATTTTTTTTCCCCCA
CCACCATTTTTGTTATCTCCCCCTTGTGCCCAAATAACAACCCCTTATGC
GTTTAACCCTATATATACATCCTTTTATTACCTCTCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_o07.g1 MSMg01no443_o07.g1 CHROMAT_FILE:
MSMg01no443_o07.g1 PHD_FILE: MSMg01no443_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:38 2005
         (274 letters)



>mm_chr3_101152838_101153512
          Length = 675

 Score =  451 bits (233), Expect = e-131
 Identities = 264/275 (96%), Gaps = 3/275 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattaggcactagtctctcggttagagatgggatcccgaatcccagagtaagcaggacct 60
           |||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 201 aattaggcactaatctctcggttagagaggggatgccgaatcccagagtaagcaggacct 260

                                                                       
Query: 61  cttttgagcaaggatctgcgagaggtgacttcatatacgtttcccccggtaattcttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttgagcaaggatctgcgagaggtgacttcatatacgtttcccccggtaattcttact 320

                                                                       
Query: 121 atgtgcatagaagatgaataagctcactcctgtttacaatatgattgtcaaggctgtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||
Sbjct: 321 atgtgcatagaagatgaataagctcactcctgtttacaatatgaaagccaaggctgtaag 380

                                                                       
Query: 181 taccaagggactgactgcatcacacactgaaagtggcagagctgggctttgtaat--cct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  || 
Sbjct: 381 taccaagggactgactgcatcacacactgaaagtggcagagctgggctttg-aataccca 439

                                              
Query: 239 ttgtcttctggctggggagcccatatcgttccctc 273
            ||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgtcttctggctggggagcccatatcgttccctc 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space:   176490
Effective search space used:   176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)