BAC Information

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BAC

Clone NameMSMg01-444H05
Chromosome3 (Build37)
Map Location 65,364,317 - 65,364,611
singlet/doubletsinglet
Overlap genenone
Upstream gene4930518C23Rik, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp
Downstream geneLOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444H05.T7 (MSMg01no444_h05.b1)MSMg01-444H05.TJ (MSMg01no444_h05.g1)
ACCAG533614AG533615
length1,167731
length of high quality
(start - end)
---295 (326 - 620)
definitionCHROMAT_FILE: MSMg01no444_h05.b1 PHD_FILE: MSMg01no444_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:21 2005CHROMAT_FILE: MSMg01no444_h05.g1 PHD_FILE: MSMg01no444_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACTATCATCCCGTNTCTGTTCTTTGTTGTGTGCTTTCTCCAAAAGGGGG
GATTGTATTTCTTGGTATTTTCCCCAAAAGAGACGGAGTTCCTGGGGTGT
TCCATGTCTCTGTGTACCTGGTTCTACTAGTGGACCGGCTGACAATCCGG
TCCAACCTTGTACCACTATTGACACCGTCGCAAAATTTGTAACCTGCAAT
ACCCCCATTGAACCGCGCGATTGCTGTCGATTGCAGAACTACGAGTGAAA
GGTATGGAGATCGCCGTTACGTACCCGTTTATTTTAATGTTTTGTATATC
TCCCCCGCATGCTACGAACTTCCCTCGTTCGTTGGGGTGCAGATTGGTAA
CCGCGTGAAATCTGTCGTGACTTATTCGCTCTACCCACCGCGGCGGAATG
CGGGTTCAGCCGTTGTTTACTCGCAAGGCGGTTTCAATATGTTAGTGAGG
GACAAAGGCGTCCACTTTAGTGAGAGAAGCGAAAAGAGAGGTGGATCTTT
CACACCCCCCGCCCCCACCCGCCCCCACACTGTGGCTTTTACACCGGATA
ATATGCTGCGGACGCGCCCGCCACTTGGCACATGAAGGGTGGGGGTAGGG
CGGCGGGAGTGTAAGTAAGTATCGGAGCAGTCGAGACGGGAGATAAACCC
ATGCGGTTGACACATGTGGGGGTGTCAACACACTATAATATGCATCTCGT
ATGCGCGCTGGTATACGTTATCGGCGTGGCGCGTGTTTTAGAGGGGTGGA
ACCCGTTACTGCGCGTGTGGTGGCCCGACCCTATGCTACTATATTGTGTG
CTCCTTATGGTTTGTGCCCGACGCGCGCGTCTACATCAGTAACGTTGTGT
GGACGGCGGAGAGACGCGCTAGGGGTATATACCACAGAGGCGCTCCTGCA
TGTCATTATTTCCGAAGCGCCGCCGACCTTTTATATATGCGCCGCGGCGG
CGTTATATCGCCGCGCGTATGATATTATATAGTCGCCCCGATTTGTATGT
TTTAGAGAGTGCGGAGAACGGGCTGCAACCAGTGTGGGTGAGACGATAAC
TATATATATACTAAGACATGATGAAGGAGGAGTGTGAGCACGTGGCCACA
ATGGTGTGGGTATGTAGCTCACACCACACTGATGTGTGTGCTGTATATAT
ATCTCTGGGCCCCGCCG
NNNNCCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAATCGATTAAAACGATTA
GGTCAAAGCCTTCAAGATCCAGCTATATCCGGAAAGCGCCTGTCAGCTGG
CAGTCGGGCATCTGACATTTGAGCCTTTTTAGGTGACACTTCATCTCTAG
CCCATAAGATCCTTCCAAGGATCACATTGATGAATATATATATATATATA
ACCTTCAGAGATGATGGGATATTAAATACACCGTTTGTATTCCTTGCTTT
TTTTTCATTGACAGTTTATCTTTTAGTGCAACTTCATTCTCCTTAATGAC
TGTGACGTGTTTTGTTGTATGAATGCTTCATGGTTTACTTCTCATTAATG
CACTTTCAAGTTGTTGCTAGTGCTGTCAACCACAAACTGTGCTGAGGTAT
CTCCTTGAGCATGTTCTATATTGACAGAACAAGCTCCTAGAAGTGGGGTT
GTTAAGTCAAAGGATAAAACATTATTCTAAATTTGGGTACATACTATGTC
ACTTACCTTAGAGATTGAATCAATGTGTCAGCATCCCTCCAGATGCCTCC
TTTGCACAAAAGTAAAAAACAGAGGACAATGGCCTCTTAAACGATCTCTC
CTTGTGTGTGTGTGCGTGCGCGTCTACCCCCTATCTTTTTTAATAACCTC
CTCCACTCTCTTTTTCTTCCTTCTCATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_h05.g1 MSMg01no444_h05.g1 CHROMAT_FILE:
MSMg01no444_h05.g1 PHD_FILE: MSMg01no444_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:21 2005
         (295 letters)



>mm_chr3_65364117_65364811
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcaacttcattctccttaatgactgtgacgtgttttgttgtatgaatgcttcatggtt 60
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 201 gtgcaacttcattctccttaatgacagtgacgtgttctgttgtatgaatgcttcatggtt 260

                                                                       
Query: 61  tacttctcattaatgcactttcaagttgttgctagtgctgtcaaccacaaactgtgctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttctcattaatgcactttcaagttgttgctagtgctgtcaaccacaaactgtgctga 320

                                                                       
Query: 121 ggtatctccttgagcatgttctatattgacagaacaagctcctagaagtggggttgttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtatctccttgagcatgttctatattgacagaacaagctcctagaagtggggttgttaa 380

                                                                       
Query: 181 gtcaaaggataaaacattattctaaatttgggtacatactatgtcacttaccttagagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaaaggataaaacattattctaaatttgggtacatactatgtcacttaccttagagat 440

                                                                  
Query: 241 tgaatcaatgtgtcagcatccctccagatgcctcctttgcacaaaagtaaaaaac 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaatcaatgtgtcagcatccctccagatgcctcctttgcacaaaagtaaaaaac 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)