BAC Information

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BAC

Clone NameMSMg01-444I07
Chromosome3 (Build37)
Map Location 131,405,215 - 131,405,460
singlet/doubletsinglet
Overlap genenone
Upstream gene2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444I07.T7 (MSMg01no444_i07.b1)MSMg01-444I07.TJ (MSMg01no444_i07.g1)
ACCAG533666AG533667
length801743
length of high quality
(start - end)
248 (73 - 320)253 (64 - 316)
definitionCHROMAT_FILE: MSMg01no444_i07.b1 PHD_FILE: MSMg01no444_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:26 2005CHROMAT_FILE: MSMg01no444_i07.g1 PHD_FILE: MSMg01no444_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAAT
TCTGTTAGAATTCCCTGCTACATCCCAAGGTATCTTCATCTTTCATAATG
ATCCTTTATTTTAGCCTGACAAAACATGAATTGGGTTTGTTCTCCACAAC
CCAAGAATCTGGACTCCTGATGAAAGAATAAATCAATGAGAAATAGTGTC
TCAAATGGTCCCACCCTGTTGGACCATAAATGTAAACCATATATGCCATT
TTTAAAATTTAGAGCCACATTTGCAAATGAAAGGAGGAAGCAAAAATACT
TGGAGTTGATTTTATTTATTTTTATAAATTCAACATATAAACACTTCAGG
GAGCAATTTTAGTTACTATTCTGGTCACTGTAACAAAATATCTTATAATA
CCCTACTCTATTAGAGTTTGGCTGCTCACTTGTGCTCATAGTTTAACTAT
TGATGCTTTGACACCGTCGTTGCCTTTTCCATTCTTATATCTTCAACCCC
CTCAATTTTTTCAATCACCCTGTCCAATTTTTTTCCCATATTTTTTTATA
TTTTTTACTTTTTTCACCCTTTGTCCTGTTTTCAACCTATATTCCCCTTT
ATCCACCCTTTTCAACGTTTTTGCTTTTTCTATGTCTTTTCCTTACCTTT
TCTATACTTTTCCTCGCTTGTTCCTTTTTTTTTTCATCTATTTCCCTTCT
ACGATTTCTCTTTCCTAATTATTTTAAGCCGCCGTTTTTCCTCCTTTATC
CTTATTTCCTCTCTCCGTTTAGCCACCCCATTTTCCGAGCCAACCCCCTA
N
NNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCTGCGGAATTCTGAGGGCTGTTAGGGATTTTGTA
GCTTAGCCTACTGTTGTAAGCCGGCCTGTGGCTTACATGAACTGGGTATT
TCTGGAAGGCAGGCTGGGGCTGAAAGAGCCTTAGACTGTGAGAAAAGATA
ATGAAGCCAAGACAAAAATATCTCTGATCAAGGCCCAAGAGTATACTAAG
AGACCGTGCTTATAAGGGAGAAGGTCCATCCTCCCTGCCAGTCCATTCTT
GGTGCCTGGAGCCTGTTATTTTTTGGTCACCAGGCTGGTTGCTTATTCAG
GAATGTCTCAGGAAGACAGGTTCAACCTCTCGGCAGGTAGCAGAAGAGCA
GGGCAGTTGTCACTTCAAAAGGAGCCAGCCAAGTTGGAAAACTGCATTGC
AGGTGGCCCCATCTCAGTGGCGACCTGTGCCAGCCCGCTTCAGGCTGGGG
GAGGCTACAGCCTACTACTTGGAATATGATTATATATATATATATATATA
TATATCTATATATATATTGCCACTTACCATTATATTGTATTCTTTTGTTT
TCACCGTCCTGTACCCTGTTGGTCGCACCCCTTTTTCCCTCCTTTCTCCA
CCCCTTTTATATTCTTTTCACCATGTCCTTTCCCAGTTTCTTCTTTCCCC
TTTTTTCCGTGACCTCTTTCCTTTTTTTTTTCCCTTTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_i07.b1 MSMg01no444_i07.b1 CHROMAT_FILE:
MSMg01no444_i07.b1 PHD_FILE: MSMg01no444_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:26 2005
         (248 letters)



>mm_chr3_131405015_131405662
          Length = 648

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccaaggtatcttcatctttcataatgatcctttattttagcctgacaaaacatgaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcccaaggtatcttcatctttcataatgatcctttattttagcctgacaaaacatgaatt 387

                                                                       
Query: 61  gggtttgttctccacaacccaagaatctggactcctgatgaaagaataaatcaatgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gggtttgttctccacaacccaagaatctggactcctgatgaaagaataaatcaatgagaa 327

                                                                       
Query: 121 atagtgtctcaaatggtcccaccctgttggaccataaatgtaaaccatatatgccatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atagtgtctcaaatggtcccaccctgttggaccataaatgtaaaccatatatgccatttt 267

                                                                       
Query: 181 taaaatttagagccacatttgcaaatgaaaggaggaagcaaaaatacttggagttgattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taaaatttagagccacatttgcaaatgaaaggaggaagcaaaaatacttggagttgattt 207

                 
Query: 241 tattta 246
           ||||||
Sbjct: 206 tattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)