Query= MSMg01no444_o08.b1 MSMg01no444_o08.b1 CHROMAT_FILE:
MSMg01no444_o08.b1 PHD_FILE: MSMg01no444_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:56 2005
(274 letters)
>mm_chr3_147511227_147511900
Length = 674
Score = 478 bits (247), Expect = e-139
Identities = 266/275 (96%), Gaps = 8/275 (2%)
Strand = Plus / Plus
Query: 5 gaattcctaacatgag---tccctcatgaaaaaaaa-a-acataattgaagtgtttctat 59
|||||||||||||||| | ||||||||||||| | |||||||||||||||||||||
Sbjct: 203 gaattcctaacatgagctat---tcatgaaaaaaaagagacataattgaagtgtttctat 259
Query: 60 gcttggatgctataacgtatttttaataaaaataaaaacagtaatagaaaaagcagaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcttggatgctataacgtatttttaataaaaataaaaacagtaatagaaaaagcagaaaa 319
Query: 120 gaaaggcaagtatcccacagcagctgaacctatttaacagagactctgcatattccctat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaaaggcaagtatcccacagcagctgaacctatttaacagagactctgcatattccctat 379
Query: 180 cccttgggtaaaagtatgtggttaaacctgggaggggggcggcatttcatgggcatatgt 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 cccttgggtaaaagtatgtggttaaacctgggaggggggcagcatttcatgggcatatgt 439
Query: 240 cacccttcatattaccaccagcagaaacgactaca 274
|||||||||||||||||||||||||||||||||||
Sbjct: 440 cacccttcatattaccaccagcagaaacgactaca 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no444_o08.g1 MSMg01no444_o08.g1 CHROMAT_FILE:
MSMg01no444_o08.g1 PHD_FILE: MSMg01no444_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:56 2005
(445 letters)
>mm_chr3_147653585_147654428
Length = 844
Score = 797 bits (412), Expect = 0.0
Identities = 437/446 (97%), Gaps = 3/446 (0%)
Strand = Plus / Minus
Query: 1 cttctcggcagggtagattttattgtgattagcccatgcaaaatttatagagccagatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cttctcggcagggtagattttattgtgattagcccatgcaaaatttatagagccagatga 585
Query: 61 tctgtaaagagagacaaaataatattttttgtaagccgctgtcagaaacttttcccatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tctgtaaagagagacaaaataatattttttgtaagccgctgtcagaaacttttcccatgc 525
Query: 121 ctctgagaggtagaatcctcagtcgtggctctgtctggtggtctaagatgtatagggctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 524 ctctgagaggtagaatcctcagtcgtggctctgtctggtggtctaagatgcagagggctg 465
Query: 181 tcagcccgggcgccggggaggacgatcgttgggggattttgctgctctttctatttg-tt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 464 tcagcccgggcgccggggaggacgatcgttgggggattttgctgctctttctatttgcct 405
Query: 240 tatttggagccttatgctcagcatttcctaaagcaaaagagagatgaaatctctgggcac 299
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatagggagccttatgctcagcatttcctaaagcaaaagagagatgaaatctctgggcac 345
Query: 300 ctcactgccgctgcctctcaaagatttcctgtcaaaacgagcctataaggggagaaaggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctcactgccgctgcctctcaaagatttcctgtcaaaacgagcctataaggggagaaaggt 285
Query: 360 tttcaataacattttttttttaacctggcaggatttccaagcctggcaatgaaaagagtt 419
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tttcaataac--tttttttttaacctggcaggatttccaagcctggcaatgaaaagagtt 227
Query: 420 tgaagcctcggtctttgttaaagttg 445
||||||||||||||||||||||||||
Sbjct: 226 tgaagcctcggtctttgttaaagttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 844
Length adjustment: 10
Effective length of query: 435
Effective length of database: 834
Effective search space: 362790
Effective search space used: 362790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
