Query= MSMg01no444_o15.b1 MSMg01no444_o15.b1 CHROMAT_FILE:
MSMg01no444_o15.b1 PHD_FILE: MSMg01no444_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:57 2005
(509 letters)
>mm_chr3_10429475_10430383
Length = 909
Score = 930 bits (481), Expect = 0.0
Identities = 499/505 (98%)
Strand = Plus / Plus
Query: 5 gaattctcttcttctctctactgtgtgacctgagctggaggaggccagagtgcaccagga 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcttccctctactgtgtgacctgagctggaggaggccagagtgcaccagga 264
Query: 65 acaatgagagcagagctgccgcaatagcctctgacaggctgggaagtaagcattatgttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaatgagagcagagctgccgcaatagcctctgacaggctgggaagtaagcattatgttt 324
Query: 125 atagaagaaacagtcatgaaaggtggagacaatgcaaggacaaagcagggtagtactatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagaagaaacagtcatgaaaggtggagacaatgcaaggacaaagcagggtagtactatt 384
Query: 185 gcagggtttgaatctgcacatagctcttacgcagcctcagacttacaacacatgttctag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagggtttgaatctgcacatagctcttacgcagcctcagacttacaacacatgttctag 444
Query: 245 cttctttctgatcatacattttcctatccccaatctcaaccttactttctagccattcaa 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 cttctttctgatcatacattttcctacccccaatctcaaccttactttctagccattcaa 504
Query: 305 atcccacaatttctacaaatacaaattccagtattgctcccctccagcacctctacttta 364
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 atcccacaattcctacaaatacaaattccagtattgcttccctccagcacctctacttta 564
Query: 365 ataatctacattacacagaacagcaatttacaaacttccttcttttattcaaacagttgc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataatctacattacacagaacagcaatttacaaacttccttcttttattcaaacagttgc 624
Query: 425 ccaagttctctatatgacatgtgaccaagcagttaaaggccaacatttatgacacatgaa 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 ccaagttctctatatgacatgtgaccaagcagttaaaggccaacatttatgacacacgaa 684
Query: 485 taatccttctcttcaccttctcatg 509
||||||||||||||||||| |||||
Sbjct: 685 taatccttctcttcaccttgtcatg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_o15.g1 MSMg01no444_o15.g1 CHROMAT_FILE:
MSMg01no444_o15.g1 PHD_FILE: MSMg01no444_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:57 2005
(585 letters)
>mm_chr3_10560338_10561322
Length = 985
Score = 1033 bits (534), Expect = 0.0
Identities = 573/590 (97%), Gaps = 10/590 (1%)
Strand = Plus / Minus
Query: 1 aacttaagccctaaggcatatgaagcaagcactctgcaagtaagctacagccacaatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aacttaagccctaaggcatatgaagcaagcactctgcaagtaagctacagccacaatttt 726
Query: 61 aaggacttcaattcacgtcagaaaattcatttcagtgcttctaggtaatcaaaagtg-gc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 725 aaggacttcaattcacgtcagaaaattcatttcagtgcttctaggtaatcaaaagtgag- 667
Query: 120 cagttggaacatgaagatcagtaagttctctccagatttcaaaacaaagacatcccagag 179
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 666 cagttggaacatgaagatcagtaagctctctccagatttcaaaacaaagacatcccagac 607
Query: 180 tggcagttgtgtggcagtttgaagaagtacctggaccgaattacaaagggaaggcaacag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tggcagttgtgtggcagtttgaagaagtacctggaccgaattacaaagggaaggcaacag 547
Query: 240 gctctaa----ttttaaatactccataagcagttccagggtcagcacaagagcaggttag 295
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gctctaagaag----aaatactccataagcagttccagggtcagcacaagagcaggttag 491
Query: 296 gaaactctgcctttaaagcatgttacaaagtggcatgagttaggaccactaatggatatc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaaactctgcctttaaagcatgttacaaagtggcatgagttaggaccactaatggatatc 431
Query: 356 aaggtaacttttgcctttagttctggtgagattcttccactgtgaagtcttgacaataga 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaggtaacttttgcctttagttctggtgagattcttccactgtgaagtcttgacaataga 371
Query: 416 attttaggaaagaaattctgcaggcaaggaccttgggtaaaaatttgaatatgcttgaac 475
||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
Sbjct: 370 attttaggaaagaaattctgcaggcaaggaccttgagtaaaaatttaaatatacttgagc 311
Query: 476 agtcctgcattctaaactgaagtaaaagacccagcaattctgaaatgaacttcatcagaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agtcctgcattctaaactgaagtaaaagacccagcaattctgaaatgaacttcatcagaa 251
Query: 536 taataatactatttatttagagttgacatagatcctgagatattcattca 585
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 250 taataatactatttatttagagttgacatagattctgagatattcattca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
