BAC Information

Click to search

BAC

Clone NameMSMg01-445C16
Chromosome3 (Build37)
Map Location 128,116,744 - 128,316,267
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445C16.T7 (MSMg01no445_c16.b1)MSMg01-445C16.TJ (MSMg01no445_c16.g1)
ACCAG534161AG534162
length717739
length of high quality
(start - end)		287 (315 - 601)495 (70 - 564)
definitionCHROMAT_FILE: MSMg01no445_c16.b1 PHD_FILE: MSMg01no445_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:17 2005CHROMAT_FILE: MSMg01no445_c16.g1 PHD_FILE: MSMg01no445_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,315,981 - 128,316,267)(128,116,744 - 128,117,238)
sequence
ATTTGGGGCGCTAAACGACTACTATTTGCAGAGGATGGCNGGAATAATAA
TTTTCCAAAAACAATGTCCTGTCATTTTTGGCAAGCAAGTAATTATTCTG
CACTAACATTCAGTAATAGGAGCAGGAAACTGCTGTGGACACCTTCATCC
CGATGCCCAGGAAAGTCACCTTAACAGGATTTTCCTTCTAATCAGCAATA
ATTCCTCTTCCTCTTCTGATGTGATTTGGTCCACTTTTCATGTGAGTTGC
ATGTGTGGATTTTCTAGACGCTTTTACTCCACCCCCCCACCCCCAAACCT
GCCTTTGGCTGNTTGAAAGTTTAACAACTTCAGTGCCTGTTGTTTAATAT
TTTCTGTTCTTATAGGCTGCAGTTGTGCTGTCTATTTGCTTTTACTGATT
TGCGAAAGATTTATTATAAACCAAATACAGCTGTTCACCTCTTTCATAAA
GTCCAAACTCTTTCGGCAAACCTGTTTTGCACTATGAAAATACATTAGGA
ATCCTTTCCGTCACCAGCCTGTGTCTCACAAGCATGGTCTCTGCTGAGTG
GGACAGGGCGGGCACCAGCGTAAGGAAACGAGAACGCACATGCTTCGGAA
GGAAGCAGGCAGATGGGAAGACAGGACTCTTTTGTTTATTGTTGGGATTC
AGCATGATTCTGTACAGATTTCTAGGGCTCATAATGACCACTTCCAAACC
ACCCCTCCGCAAATCAA

ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATCTTATTTGCCTGTAATTTTAAAACTTCT
TTACATCTCTGTAATTAATAATAAAATGAGAACTTAATTCAAATAAAACT
ATACTTTATTATCTGAGATATCACTGAAATAATGCTTTAATATAGAGCAT
ATTAATATACTTTTAATTTTGCTCGATATAAAATAAGTTTCACATTGGTT
AATTTGTTATTGCATTTAGTCTTTGGGCAAGAAAATATTAGAATGTAGTT
TTTAAATCATGTTTATATTTTTGAAGAAAATTAAATGAATAATCTCAGAA
CCAAATAAGAAGTCGTCTAGAACCAAATTAATGTGATTATTGTGAAAGAC
AACACTATTTTTCCTTTATTTCCTGATATACAAATATGTATATATACACA
CACATATAAACACTATATATATGCACACACATATATTCACACGTATATAC
ATAAATGCCCCATGTACATATATGAAATCTCTGATGGTTGTTTTCTGGNA
ATATATGCCAGTCACTTGTAGTCTCTCCCTAGGCTCAACATATGAAGTTG
CTCCCGAACAGAGGTCATCTGACGAACATTGCCCTGTATTTGCCTATGGC
TGGAAACCCCCTGAGGGTAATATGCTTCCTGTCTCCCCTTCCTAACCTCC
AGTTCTACGTTTTCCCTAACCTGTACCTTCCCCTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_c16.b1 MSMg01no445_c16.b1 CHROMAT_FILE:
MSMg01no445_c16.b1 PHD_FILE: MSMg01no445_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:17 2005
         (287 letters)



>mm_chr3_128315781_128316467
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagtttaacaacttcagtgcctgttgtttaatattttctgttcttataggctgcagtt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 487 gaaagtttaacaacttcagtgcctgttgtttaatattttctgtttttataggctgcagtt 428

                                                                       
Query: 61  gtgctgtctatttgcttttactgatttgcgaaagatttattataaaccaaatacagctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtgctgtctatttgcttttactgatttgcgaaagatttattataaaccaaatacagctgt 368

                                                                       
Query: 121 tcacctctttcataaagtccaaactctttcggcaaacctgttttgcactatgaaaataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcacctctttcataaagtccaaactctttcggcaaacctgttttgcactatgaaaataca 308

                                                                       
Query: 181 ttaggaatcctttccgtcaccagcctgtgtctcacaagcatggtctctgctgagtgggac 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 307 ttaggaatcctttccgtcaccagcctgcgtctcacaagcatggtctctgctgagtgggac 248

                                                          
Query: 241 agggcgggcaccagcgtaaggaaacgagaacgcacatgcttcggaag 287
           |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 247 agggcgggcaccagcgtaaggaaaagagaacgcacatgcttcggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no445_c16.g1 MSMg01no445_c16.g1 CHROMAT_FILE:
MSMg01no445_c16.g1 PHD_FILE: MSMg01no445_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:17 2005
         (495 letters)



>mm_chr3_128116544_128117438
          Length = 895

 Score =  882 bits (456), Expect = 0.0
 Identities = 485/495 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcttatttgcctgtaattttaaaacttctttacatctctgtaattaataataaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcttatttgcctgtaattttaaaacttctttacatctctgtaattaataataaaatga 260

                                                                       
Query: 61  gaacttaattcaaataaaactatactttattatctgagatatcactgaaataatgcttta 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacttaactcaaataaaactatactttattatctgagatatcactgaaataatgcttta 320

                                                                       
Query: 121 atatagagcatattaatatacttttaattttgctcgatataaaataagtttcacattggt 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 atatagagcatattaatatacttttaattttgctcaatataaaataagtttcacattggt 380

                                                                       
Query: 181 taatttgttattgcatttagtctttgggcaagaaaatattagaatgtagtttttaaatca 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatttgttatttcatttagtctttgggcaagaaaatattagaatgtagtttttaaatca 440

                                                                       
Query: 241 tgtttatatttttgaagaaaattaaatgaataatctcagaaccaaataagaagtcgtcta 300
           ||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tggcaatatttttgaagaaaattaaatgaataatctcagaaccaaataagaagttgtcta 500

                                                                       
Query: 301 gaaccaaattaatgtgattattgtgaaagacaacactatttttcctttatttcctgatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaccaaattaatgtgattattgtgaaagacaacactatttttcctttatttcctgatat 560

                                                                       
Query: 361 acaaatatgtatatatacacacacatataaacactatatatatgcacacacatatattca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 acaaatatgtatatatacacacacatataaacactatatatatgcacacacatatatgca 620

                                                                       
Query: 421 cacgtatatacataaatgccccatgtacatatatgaaatctctgatggttgttttctggn 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 cacgtatatacataaatgccccatgtacatatatgaaatctctgatggttgttttctggt 680

                          
Query: 481 aatatatgccagtca 495
           | |||||||||||||
Sbjct: 681 agtatatgccagtca 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |