BAC Information

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BAC

Clone NameMSMg01-445C18
Chromosome3 (Build37)
Map Location 29,015,938 - 29,172,267
singlet/doubletdoublet
Overlap gene6130401L20Rik
Upstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445C18.T7 (MSMg01no445_c18.b1)MSMg01-445C18.TJ (MSMg01no445_c18.g1)
ACCAG534165AG534166
length740751
length of high quality
(start - end)
219 (317 - 535)441 (69 - 509)
definitionCHROMAT_FILE: MSMg01no445_c18.b1 PHD_FILE: MSMg01no445_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:17 2005CHROMAT_FILE: MSMg01no445_c18.g1 PHD_FILE: MSMg01no445_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,172,049 - 29,172,267)(29,015,938 - 29,016,378)
sequence
TTGCGGCCGCTAAACGACTACCTAAATACAGAGACAGCGCGGAATTCTTC
AAATTAACGACAATAATTTCTCAGCAGAATCATTTGCCAACACCTTCAGT
GTTTATGTAACTGGCCTTGCCCTTTTTAGCTCACCAGAGACAACAGGGAG
CTCCAACAGACAGAGCTTATTTCTACTTGCTACAATGCACATATTTTCAC
ATGGTAACATCTTAGGAATTGAGATATTTTCTTGCAAACAATGACAATTT
AAATGTTTGGCTTGTTCTAGCAGCTTCCAATGGCTGTCATCACTTCCTGT
CATTCCCCGGGTGATAGCAGAGCTGTTCTAGCATGTTTTGTTTTATTTTA
TATACTTCCATTTCCAAATCAGAGAAGCCCTAGACTATAAACTTGGGAGT
TTTATGCCAAGCCAAATGCCTTTTGACACATTTGTTTGACTTTGGTACCT
ACTAATTAAAGTATTACAATTAAAAGACTATATTCTTTGTTTCAGGTTAG
CTAAGATGGAGGGAGGGAACTCACTTGGCACTTAAAGGACCATTAGAAAG
CTCTTTTAGGACACATAAAATATGGGAAATTTTTTTATATAATTTTATTT
CTTAATCATCTGCAAAACAGTGCTATGCCTGACATTTAATGTTATGCTAG
ACGTTATGAAATTTGGGAGACAGTGACTAAATTTAATAAATGCCATGTTT
CACCACCGGATGGGCACAAACATCGACCCCTGTGACCATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGATAGGTCGCTGTTCAGAAGGGTAAGCAGGA
TTGTACTGGCTGCCAGGGGAGCAAACGAAAAAACCAGAGTCAAGATATCT
TGGGAAAGTATTGGCTCATGAGAGGACTGGGCTAGATGAATGAAGAAAGG
AGAGGGATGGAGGCCCCTGCTTGCAAAGCAATATATCAAGCTGCAAGATT
GCCTGGAAGTTTCTGGAAGGCTCATCAGAGCAGGGGCAGTATATGAAAAG
CCAGGGAACAAAGACAGGAAATGAGTCAGGCAATTCAAAAAGAAGGTGTT
TTGAAAACATCTAAAGATGTTGACAGGCCCAGTGCAGGCAACCACAGCCA
CTGTAAATTCAGGATTACAATGACCATGTCAAGCAGCAAGACAGCATTTT
GCAACCCTCTCCCCATCTTGTAGCTCTTACATCTTTTCTTGCACCTTCTT
CTGAAATGTTCTCTGAGCCTCAGAGAGGGCAGTATAATGTCCTACATAGG
ACTGAGAACTTTGCCATCAGCATGCTGTCTTGGGCCGAAAGGGACTCTGG
TATCCCTTTCTGGCCCGATCGAGCTAATGTTATCTATAACATGCTTTGTT
TATACTAAATTCTTGTCTCTCCTGTGGGTATATCGTTCCATTTTTTTCCC
CCCTTGGGTAAATGCTTATACCCTTGCTTGTCCTATACTTTCCTTTTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_c18.b1 MSMg01no445_c18.b1 CHROMAT_FILE:
MSMg01no445_c18.b1 PHD_FILE: MSMg01no445_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:17 2005
         (219 letters)



>mm_chr3_29171849_29172467
          Length = 619

 Score =  400 bits (207), Expect = e-116
 Identities = 216/219 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagagctgttctagcatgttttgttttattttatatacttccatttccaaatcagagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcagagctgttctagcatgttttgttttattttatatacttccatttccaaatcagagaa 360

                                                                       
Query: 61  gccctagactataaacttgggagttttatgccaagccaaatgccttttgacacatttgtt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 359 gccctagactataaacttgggagttttatgccaagccaaatgacttttgacacatttgtt 300

                                                                       
Query: 121 tgactttggtacctactaattaaagtattacaattaaaagactatattctttgtttcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgactttggtacctactaattaaagtattacaattaaaagactatattctttgtttcagg 240

                                                  
Query: 181 ttagctaagatggagggagggaactcacttggcacttaa 219
           ||||||||||||||| |||| ||||||||||||||||||
Sbjct: 239 ttagctaagatggagagaggaaactcacttggcacttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no445_c18.g1 MSMg01no445_c18.g1 CHROMAT_FILE:
MSMg01no445_c18.g1 PHD_FILE: MSMg01no445_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:17 2005
         (441 letters)



>mm_chr3_29015738_29016578
          Length = 841

 Score =  845 bits (437), Expect = 0.0
 Identities = 440/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgataggtcgctgttcagaagggtaagcaggattgtactggctgccaggggagcaaacga 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 tgataggtcgctgttcagaagggtaagcaggattgcactggctgccaggggagcaaacga 260

                                                                       
Query: 61  aaaaaccagagtcaagatatcttgggaaagtattggctcatgagaggactgggctagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaccagagtcaagatatcttgggaaagtattggctcatgagaggactgggctagatg 320

                                                                       
Query: 121 aatgaagaaaggagagggatggaggcccctgcttgcaaagcaatatatcaagctgcaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaagaaaggagagggatggaggcccctgcttgcaaagcaatatatcaagctgcaaga 380

                                                                       
Query: 181 ttgcctggaagtttctggaaggctcatcagagcaggggcagtatatgaaaagccagggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcctggaagtttctggaaggctcatcagagcaggggcagtatatgaaaagccagggaa 440

                                                                       
Query: 241 caaagacaggaaatgagtcaggcaattcaaaaagaaggtgttttgaaaacatctaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagacaggaaatgagtcaggcaattcaaaaagaaggtgttttgaaaacatctaaagat 500

                                                                       
Query: 301 gttgacaggcccagtgcaggcaaccacagccactgtaaattcaggattacaatgaccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgacaggcccagtgcaggcaaccacagccactgtaaattcaggattacaatgaccatg 560

                                                                       
Query: 361 tcaagcagcaagacagcattttgcaaccctctccccatcttgtagctcttacatcttttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaagcagcaagacagcattttgcaaccctctccccatcttgtagctcttacatcttttc 620

                                
Query: 421 ttgcaccttcttctgaaatgt 441
           |||||||||||||||||||||
Sbjct: 621 ttgcaccttcttctgaaatgt 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)