Query= MSMg01no445_e02.b1 MSMg01no445_e02.b1 CHROMAT_FILE:
MSMg01no445_e02.b1 PHD_FILE: MSMg01no445_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:23 2005
(530 letters)
>mm_chr3_149696970_149697899
Length = 930
Score = 746 bits (386), Expect = 0.0
Identities = 398/406 (98%), Gaps = 8/406 (1%)
Strand = Plus / Minus
Query: 1 gctctgagagtatgtgttactagatctactttgcagagacattgagctgcactcagtatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gctctgagagtatgtgttactagatctactttgcagagacattgagctgcactcagtatt 343
Query: 61 tcccacctcttccgtgtccacatttcagatgtgaactagcaactttaaaaacacttcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tcccacctcttccgtgtccacatttcagatgtgaactagcaactttaaaaacacttcaga 283
Query: 121 gattgcagaggatattgagcagaaagacaaataaaatcatattaaaatactgtggagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gattgcagaggatattgagcagaaagacaaataaaatcatattaaaatactgtggagcaa 223
Query: 181 gtggataagaaataagatttggtgttgtaggatatttgatcccactgtgaacccaaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gtggataagaaataagatttggtgttgtaggatatttgatcccactgtgaacccaaagac 163
Query: 241 tgtgaactggaaa----ttttttgtgatgtggctcagccttagcacacacatgaaactcg 296
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tgtgaactggaaaaacc----ttgtgatgtggctcagccttagcacacacatgaaactcg 107
Query: 297 agaactttctgaaaagaagaggtaaataaagtcattgatagggggtaaacataagaaaag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 agaactttctgaaaagaagaggtaaataaagtcattgatagggggtaaacataagaaaag 47
Query: 357 ccaggaaagagagagcagagtcttttgagttgaaggatatctaaga 402
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ccaggaaagagagagcagagtcttttgagttgaaggatatctaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no445_e02.g1 MSMg01no445_e02.g1 CHROMAT_FILE:
MSMg01no445_e02.g1 PHD_FILE: MSMg01no445_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:23 2005
(550 letters)
>mm_chr3_149566325_149567272
Length = 948
Score = 901 bits (466), Expect = 0.0
Identities = 529/552 (95%), Gaps = 6/552 (1%)
Strand = Plus / Plus
Query: 1 aagattactcataataaatagagaaacaaaaagttagaaaaataagaatgtaaaaaa--t 58
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct: 201 aagattactcataataaatagaaaaacaaaaagttaggaatataagaatgtaaaaaaaat 260
Query: 59 gacaaagtaatctgggaaagtagatttcctaatgttatgaagatactcggttctataaag 118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gacaaagtaatctgggaaagtagatttcctaatgttatgaaaatactcggttctataaag 320
Query: 119 agaaggcaaaatcaagaagctcagctttgatatcactgaagtgtggtctaaagggtcttc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaggcaaaatcaagaagctcagctttgatatcactgaagtgtggtctaaagggtcttc 380
Query: 179 tgttggactatttattccttaaggtagcacgggttcatttgatactctgttgattgggag 238
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tgttggactatttattccttaaggtagcatgggttcatttgatactctgttgattgggag 440
Query: 239 ttacactgttttaaatttaatgtcattgtgtagattttttccccagaagaaatggaataa 298
||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttacactgtgtgaaatttaatgtcattgtgtagatttt--ccccagaagaaatggaataa 498
Query: 299 tttctgtgctatgtagaagctgataggaactctctcttgtgttaccctcttaggcatctc 358
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 499 tttctgtgctatgtagaagctgataggaactctct--tgtgttaccctcttaggcatctc 556
Query: 359 cggctttgtctttaactcagcaaacttccctcagatcgctttctccttcccaggtttagt 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 557 cggctttgtctttaactcagcaaacttccctcagatctctttctccttcccaggtttagt 616
Query: 419 ctgtgtctaaaagaccttgtcagctagtttttctactcactgtttcctcacagaggacac 478
|||| ||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 617 ctgtatctaaaagaccctgtcagctagcttttccactcactgtttcctcaccgaggacac 676
Query: 479 caatacatatttgtgatctgaaattgtaattaatacagcattgtttatgtgctaaggatt 538
|||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 677 aaatacatatttgtgatctgaaattgtaactaatacagaattgtttacgtgctaaggatt 736
Query: 539 aatttggctact 550
||||||||||||
Sbjct: 737 aatttggctact 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 948
Length adjustment: 10
Effective length of query: 540
Effective length of database: 938
Effective search space: 506520
Effective search space used: 506520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
