BAC Information

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BAC

Clone NameMSMg01-445E19
Chromosome3 (Build37)
Map Location 74,251,890 - 74,252,131
singlet/doubletsinglet
Overlap genenone
Upstream geneBche, LOC667425, LOC619764, LOC667434
Downstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445E19.T7 (MSMg01no445_e19.b1)MSMg01-445E19.TJ (MSMg01no445_e19.g1)
ACCAG534263AG534264
length717744
length of high quality
(start - end)
245 (371 - 615)410 (72 - 481)
definitionCHROMAT_FILE: MSMg01no445_e19.b1 PHD_FILE: MSMg01no445_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:27 2005CHROMAT_FILE: MSMg01no445_e19.g1 PHD_FILE: MSMg01no445_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGNAACGAGGCGCGGAATT
CTTTCTTAACAATAAAGCTAGTAAACACTGGCACTTCTAATTTTTTTGTT
TCTATTAGTTTCCTACTGTTTTTTTCTAGAAAATGACCACAAATTCAGTG
ACCTGAGAAACAAATGTACTGCCTTAGACTTCTATAGGCTAAGGATCTAA
AAAATATCCCACCAGGAAGTCACCAAAATATTTGCCTTGTTTTCTAGAAG
CTCTAGAGAATAATATATTTTCTTGACTCTTCATCTCCAAGAGTTGCCCT
GTTTTAATTAACTGGCTTTTAAATGNCTTGGTCTGACCTTAACTCCAGGA
AAAATTATTGCCGACACATCAGTATTGCTGTCATTGTAGTTTTCTCACCT
CCTGTTCTAAATTTTATTACAGTAATTCTGTGCTTTCTTACATACTTGGG
AAAAACTTTTCAATTTAAACGTCAGATGATTAACGATCACCTTTTCCTTC
TTATACTGAAAATTAATTTTTGCACACAGTATATTCTCATTATGATTTCT
TCTTGCTTAATCATTCCTCTGATCCTCCTCATTTCCTTTAGAACACTCCA
TCCCAAATGTGCATCAAATCAGGGCACAGATTTTTATTTTTATAAGGAAG
CAGAAAGATTTTAAGAGCCAACTTAGATGAAGAACACACACACCAACTTC
AAAATAAGGACTTCTTA
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGTTTAGTTCTACAAACAGTTTTTAAA
TTGGGTTATTTGGTTTGCTGGAGCCTAACTAATTGGGTAGACAAATTGGC
ATTCTTTATATATTTTGAATGTTAGCAGTCTGCCAGATGTGGGGCTAATG
AAGAGTTTTCACAATCTCTATGCAGTGGTTTTCTCATATTGTAGATCTTT
TGCCTTACAGAATCTTTTCAGTAGGATGAGGTCCTACTTATCTATTGTTG
ATCAATCACTTTATTCCAGGTTACACTAATCAATATAGCTAAGATAAAAA
CTCGAACAACAGGACATGCTGGCGAGAATGTGGAGAAGTGGGAACATTCC
TCCATTAATGATGGACTGAAAACTTGTGCAATCACTCTGGAAATCAATCT
GACAGTTTCTCAGGAATCTGGAAATACATGAAGACCCTGCTATACAGATC
CTGGACATATATAAAAAAGATGTTCTATCCTTTTCTCAGGGACACTTGTT
GCATTATGTTTCTATAGAGCTTTATTTGTAAAACCCTAAAACTGGGAACG
ATTCTGGTTTCCCCCACCAAATGGATGGGATCCCAAAAATTTGTTTTCTT
TAAAACACGGGGAATATTTTTCCTCTTATAAAACACTGGGATTTTCTTGT
TTTTGTCCCCTGTTTTTTTGCGATTTTCCAAATCCCTTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_e19.b1 MSMg01no445_e19.b1 CHROMAT_FILE:
MSMg01no445_e19.b1 PHD_FILE: MSMg01no445_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:27 2005
         (245 letters)



>mm_chr3_74251690_74252331
          Length = 642

 Score =  412 bits (213), Expect = e-119
 Identities = 236/245 (96%), Gaps = 3/245 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtattgctgtcattgtagttttctcacctcctgttctaaattttattacagtaattctg 60
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 201 agtattgctgtcattgtagttttctcacctcctgttctaaagttcattacagtaattctg 260

                                                                       
Query: 61  tgctttcttacatacttgggaaaaacttttcaatttaaacgtcagatgattaacgatcac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tgctttcttacatacttgggaaaaacttttcaatttaaacgtcagatgattaacgatccc 320

                                                                       
Query: 121 cttttccttcttatactgaaaattaatttttgcacacagtatattctcattatgatttct 180
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttcctt---atactgaaaattaatttttgcacacagtatattctcattatgatttct 377

                                                                       
Query: 181 tcttgcttaatcattcctctgatcctcctcatttcctttagaacactccatcccaaatgt 240
           |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 378 tcttgcttaatcatttttctgatcctcctcatttcctttagaacactccataccaaatgt 437

                
Query: 241 gcatc 245
           |||||
Sbjct: 438 gcatc 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 642
Length adjustment: 9
Effective length of query: 236
Effective length of database: 633
Effective search space:   149388
Effective search space used:   149388
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)