BAC Information

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BAC

Clone NameMSMg01-445F05
Chromosome3 (Build37)
Map Location 21,273,515 - 21,274,017
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445F05.T7 (MSMg01no445_f05.b1)MSMg01-445F05.TJ (MSMg01no445_f05.g1)
ACCAG534283AG534284
length741740
length of high quality
(start - end)
504 (63 - 566)471 (69 - 539)
definitionCHROMAT_FILE: MSMg01no445_f05.b1 PHD_FILE: MSMg01no445_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:29 2005CHROMAT_FILE: MSMg01no445_f05.g1 PHD_FILE: MSMg01no445_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TGAGTTTCCAGTCCTGGGGACTATTAGATCACAGTTTATTAAACAGAACC
AACACCATCATACAATAAAGAAAAAATTATTCAATTCACCTGGAAAAAAA
ATAAACACTAATCTGGATAAGCCACATTTCAACAGCCATACATGGTGAAT
GCTTTTCGAACTTGCCACATGGTTCAAGAGTGTGCTGCCTGATGGAACAC
AGGTGTGAGGTGGGCTGGAAATGCTTGAGCTGGTCTCTCTCCATTTACTC
GCCCATCTGATGTTTTAAACATCTTAGAAACTCCTCCCAGAAGCAATTAA
TGAGTGTCCTACTGAGAAATCATCAGCATGTTTTTCCTGTGTGATTCATC
TTTTGTGTTTGTGATTGAAACCACATTTAAAAACTCAAGCAAATACACAC
ATTAGAGTATTCTCAAAAGCTTAAACCAGGAAGGTTGATATCATTGAAGG
AGGCCAAGAGAAAAATTTTAGTCTGATTTTGGCTGCNAATAAAGGAAACA
AAGAGATAAAGACAGTAGAGGCCTTAGAGAACAATAATAATAATGATAAN
AATAAAAATAAAAAAGACGTGCACAGCTAAGGCCTAACTAATCGAGCTTT
GATGCGGAGCCTCAAAGATAGCTTTGTTTTTATTAAGATTTTTTCTCTGG
TCTTCTTTGGAATGGGTTCTTTTGTCTTTAAGGTGGCGCGG
AGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACACACCACATTCATCAATGGACAGATCTTG
GAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAAC
AAATGGATTTAACAGATAACTACAAAACATTTTATCCTAAAACAAAAGGA
TATACCTTCTTCTCAGCACCTCATAGTATTTTCTCAAAAATTGACCATAA
AATTGGTCACAAAACAGGCCTCAACAGATACAAAAAGTATTAAAATTGTC
TTATGCATCCTATCAGATCACCATGGAGTAAGGCTGATCTTCAATAACAA
CATAAATAATAGAAAGCCAACATTGACTTGGAAACTAAACAACACTCTTC
TCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTT
TTAGAGTTTAATGAAAATGAAGCCACAACATAGCCAAACTTATGGTACAC
AATGAAAGCATTTCTAAGAGGAAAACTCATAGCTCTGAGTGCCTCCAAAA
AGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAATCT
CTATAACAAAAGGAAGCACATTCTCCCCAGAAGATTACAGGACAGGAAAT
AATCAAACTCAGGGGCGACCTCAACCAAGGTGAAACTAGAAGAACTATTC
CCAGAATCTACCCAAGGAGGAACTTGTTCTTTTGAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_f05.b1 MSMg01no445_f05.b1 CHROMAT_FILE:
MSMg01no445_f05.b1 PHD_FILE: MSMg01no445_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:29 2005
         (504 letters)



>mm_chr3_21273315_21274217
          Length = 903

 Score =  878 bits (454), Expect = 0.0
 Identities = 492/509 (96%), Gaps = 11/509 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctggggactattagatcaca-gtttattaaacagaaccaacaccatcatacaataaaga 59
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| 
Sbjct: 703 cctggggactattagatcacatttttattaaacagaaccaacaccatcatacaataaag- 645

                                                                       
Query: 60  aaaaattattcaattcacctggaaaaaaaataaacactaatctggataagccacatttca 119
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 644 aaaaattattcaattcacctgg-aaaaaaataaacactaatctggataagccacatttca 586

                                                                       
Query: 120 acagccatacatggtgaatgcttttcgaacttgccacatggttcaagagtgtgctgcctg 179
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 585 acagccatacatggtgaatgcttttcgaacttgccacatggctcaagagtctgctgcctg 526

                                                                       
Query: 180 atggaacacaggtgtgaggtgggctggaaatgcttgagctggtctctctccatttactcg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 525 atggaacacaggtgtgaggtgggctggaaatgcttgagctggtctctctccatttactca 466

                                                                       
Query: 240 cccatctgat----gttttaaacatcttagaaactcctcccagaagcaattaatgagtgt 295
           ||||||||||    |    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cccatctgatgcggg----aaacatcttagaaactcctcccagaagcaattaatgagtgt 410

                                                                       
Query: 296 cctactgagaaatcatcagcatgtttttcctgtgtgattcatcttttgtgtttgtgattg 355
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 409 cctactgagaaatcatcagcatgcttttcctgtgtgattcatcttttgtgtttgtgattg 350

                                                                       
Query: 356 aaaccacatttaaaaactcaagcaaatacacacattagagtattctcaaaagcttaaacc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaccacatttaaaaactcaagcaaatacacacattagagtattctcaaaagcttaaacc 290

                                                                       
Query: 416 aggaaggttgatatcattgaaggaggccaagagaaaaattttagtctgattttggctgcn 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 289 aggaaggttgatatcattgaaggaggccaagagaaaaattttagtctgattttggctgca 230

                                        
Query: 476 aataaaggaaacaaagagataaagacagt 504
           |||||||||||||||||||||||||||||
Sbjct: 229 aataaaggaaacaaagagataaagacagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space:   441142
Effective search space used:   441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)