BAC Information

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BAC

Clone NameMSMg01-445I15
Chromosome3 (Build37)
Map Location 22,518,403 - 22,518,774
singlet/doubletsinglet
Overlap genenone
Upstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593
Downstream geneLOC100040378, LOC623751, LOC100039548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445I15.T7 (MSMg01no445_i15.b1)MSMg01-445I15.TJ (MSMg01no445_i15.g1)
ACCAG534446AG534447
length737748
length of high quality
(start - end)
410 (65 - 474)512 (68 - 579)
definitionCHROMAT_FILE: MSMg01no445_i15.b1 PHD_FILE: MSMg01no445_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:46 2005CHROMAT_FILE: MSMg01no445_i15.g1 PHD_FILE: MSMg01no445_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTTCTCATGAGCCCAATTTTTTAATGGGGTTATTAGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGAAA
TTTTTTTCTCGTGTCCATATCTTCAAGGCTTTTTCCCACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACTAGGAGATAAGTATGGATTGATTCGCATTCTTCTACA
TGATAACAACCAGTTGTGCCAGCACCAATTGCTGAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCTAAGATCTAGTGACCACAGGTGC
GTGGGTTCATTTCTGTTTCTTCAATTCCATTCATTCGGTTCTACTTGTTT
GTCTCTATTTCAGCACCATTGTGTTTTCATCCCTATTGTTCTTTTTCCAC
CGCTTTATTGTTTGTCCCGGTCTTCTCTTCCTCAGCTTCTTTTCACCCTT
GTCCATGTTCCCTTGTTCCCCCTCCTTTTTTTCTTTT
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTATCGTGTTTATAGCTCTGTTGTAACTTCTCT
CTAAGATGGACAGTTACATGCAAGTGAAAGCCAAACTATTTCCTCTCGAA
AGTTCCTTTTAGTTATAGTGTTTATCAGATCAACAGAAAACAAAGAAGGA
CAAACTATAGTACCAGAAGAATTGATTGCTGTTTTGATTATCAAGGAATT
TGGGGGTTTAGATTAGGAAAGCTCATTGAATCCTCAGAGTACAGTGGGGC
TTTTCTGGGAACTTTGAAAACTAGAAAGTAGAAATAAACCTGGCTTGTAA
GTTCTCAGGATGAAGTATAGACTCCAGCATGACTATAGTTGTTAAGCTTC
TGATTAAGAATTAGTAAATTATGAAAATCTTGACATTTTTGGGACAATGA
ATGTGGTTAGCTAAAGCTGAAAATTTATCTGTGATTATTAAGAAACCAGG
ATTATTAAAGCAAACTATCCTGGGAACAAAGTTTGAGGCTGTTATCATAA
AGGAGAGGTGGTCCAAATATTACAAAGGCTGTATTCTCTAGATAACAGTT
GATCTTGGAAATATGTAAGAATTCCTCATGTGGCATTGGTTTTATTGATA
TTATGGGAAAACCCGAACTTTGGTATTCTCCGAGGCTTCTTAGGTAAAAG
TCTTCCTTGGTAATGGTATACCCCAAGATATTTTCATGATGTGATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_i15.g1 MSMg01no445_i15.g1 CHROMAT_FILE:
MSMg01no445_i15.g1 PHD_FILE: MSMg01no445_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:46 2005
         (512 letters)



>mm_chr3_22518401_22519312
          Length = 912

 Score =  688 bits (356), Expect = 0.0
 Identities = 368/372 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatcgtgtttatagctctgttgtaacttctctctaagatggacagttacatgcaagtga 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctatcgtgtttatagctctgtcgtaacttctctctaagatggacagttacatgcaagtga 315

                                                                       
Query: 61  aagccaaactatttcctctcgaaagttccttttagttatagtgtttatcagatcaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagccaaactatttcctctcgaaagttccttttagttatagtgtttatcagatcaacaga 255

                                                                       
Query: 121 aaacaaagaaggacaaactatagtaccagaagaattgattgctgttttgattatcaagga 180
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 254 aaacaaagaaggacaaattatagtaccagaagaattgattgctgttttgattataaagga 195

                                                                       
Query: 181 atttgggggtttagattaggaaagctcattgaatcctcagagtacagtggggcttttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 atttgggggtttagattaggaaagctcattgaatcctcagagtacagtggggcttttctg 135

                                                                       
Query: 241 ggaactttgaaaactagaaagtagaaataaacctggcttgtaagttctcaggatgaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ggaactttgaaaactagaaagtagaaataaacctggcttgtaagttctcaggatgaagta 75

                                                                       
Query: 301 tagactccagcatgactatagttgttaagcttctgattaagaattagtaaattatgaaaa 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 74  tagactccagcatgactatagttgttatgcttctgattaagaattagtaaattatgaaaa 15

                       
Query: 361 tcttgacatttt 372
           ||||||||||||
Sbjct: 14  tcttgacatttt 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)