BAC Information

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BAC

Clone NameMSMg01-445P11
Chromosome3 (Build37)
Map Location 116,866,258 - 116,866,490
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik
Downstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445P11.T7 (MSMg01no445_p11.b1)MSMg01-445P11.TJ (MSMg01no445_p11.g1)
ACCAG534772AG534773
length738745
length of high quality
(start - end)
239 (69 - 307)459 (69 - 527)
definitionCHROMAT_FILE: MSMg01no445_p11.b1 PHD_FILE: MSMg01no445_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:21 2005CHROMAT_FILE: MSMg01no445_p11.g1 PHD_FILE: MSMg01no445_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGAAGCCGNGGAATTCCAT
CCTTTCCCCAAGAGTGTCCAAAAATATATACCTTTCCTCTAATAAGCTAC
ATTTTGTCAGAGTATTTTATCACAACAATGGAAAAAGAAACTAACGCACA
ACTACTCAATAGACAAAGCCAGGCACATGAGCAGACCTTAGGGCTCCCTC
AAAGACCAGCACTCCTTCCCTATTCATTTCTGTGACTGTTTACTGAGCAA
GCTAGCCTGTCTATCACCCAGCAGCTGATAAAGCCTCTTACATGTTTGCA
GCCTGTATCTATTCACACTGTCCTCTCTGGCTACACTTGGTACCCAGTTC
TGCCCACTTGAAGCATTTTTCTCAGCTGGTGCTCCAGGCAGGAAGAGTGG
TCAGGAACAAGACCACCAGGGAGACCATATTGCTGGGAACAATAGGCTTC
ATTGTTCACCCTCTTTTCCTCTTCCCACTTAAAAAAAATCTCCCCCAGCC
AAATGTTTCTCCCTGCTGCAGGAAATTTTGTAAGCAAATTTGGCCCAAAT
GTTGCCAGCTGTGATAGACACATAGAAATACTTTAACTCTTTCCTGCCCC
CTATTTAAAGCTTGGTGCTTTTTCGAAATATAGAAAAGTTGGCATTTAAA
CTTACCGGAAAACCGAATAAGATAAATGTCATTATCCAAATACCAAAATG
CTTCCCGGGAAACAGATACCCCTGTTCCCCCCAAACAC
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGG
GGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTG
GATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATC
TGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAAC
TTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAA
GCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAG
GCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGT
GGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGTAGATAGGAAT
GGATCAATTTGCATTCTTCTACATGATGACTGCCAGTTGTGCCAGCACCA
TTTGTTGAAAATGCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTG
TCGAAGATCAAGTGACCATAGGTGTGGTGGGTTCATTTCTCGGGTCTTCC
ATTCTCTTCCCTTGGGCCACTTGGTGGGCGCTAAACTAGTTACTTGCGAG
TTTTTATCCCAATTGTTCTGATATAACACCCTATTGCCTGGCATGGTGAG
CTCCCCCCCAATGTTTTTTCACTCTCGAAAAAATCTTTGTAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_p11.b1 MSMg01no445_p11.b1 CHROMAT_FILE:
MSMg01no445_p11.b1 PHD_FILE: MSMg01no445_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:21 2005
         (239 letters)



>mm_chr3_116865981_116866619
          Length = 639

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   aatatatacctttcctctaataagctacattttgtcagagtattttatcacaacaatgga 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aatataaacctttcctctaataagctacattttgtcagagtattttatcacaacaatgga 451

                                                                       
Query: 65  aaaagaaactaacgcacaactactcaatagacaaagccaggcacatgagcagaccttagg 124
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 450 aaaagaaactaatgcacaactactcaatagacaaagccagacacatgagcagaccttagg 391

                                                                       
Query: 125 gctccctcaaagaccagcactccttccctattcatttctgtgactgtttactgagcaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gctccctcaaagaccagcactccttccctattcatttctgtgactgtttactgagcaagc 331

                                                                
Query: 185 tagcctgtctatcacccagcagctgataaagcctcttacatgtttgcagcctg 237
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 330 tagcctgtctatcacccagtagctgataaagcctcttacatgtttgcagcctg 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)