Query= MSMg01no446_d19.b1 MSMg01no446_d19.b1 CHROMAT_FILE:
MSMg01no446_d19.b1 PHD_FILE: MSMg01no446_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:42 2005
(585 letters)
>mm_chr3_65398449_65399434
Length = 986
Score = 1036 bits (536), Expect = 0.0
Identities = 576/590 (97%), Gaps = 7/590 (1%)
Strand = Plus / Minus
Query: 1 aaacagctgaagtacagtgtttctgctcaggacttcagttttacactaagtcaaggcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 aaacagctgaagtacagtgtttctgctcaggacttcagttttacactaagtcaaggcaac 859
Query: 61 attttctaagttgccttggaaactttggctggttcctttctctggtctctttctgcgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 attttctaagttgccttggaaactttggctggttcctttctctggtctctttctgcgtgg 799
Query: 121 ttatactattaattaccagtatagcaaaatgcatttgttacagtatgaatcccagatttc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 798 ttatactattaattaccagtatagcaaaatgcatttgttacagtatgaatcccagacttc 739
Query: 181 tgctcccctagttaaccagtgaaatgtcagtagttcagcctctaagacagttcactggtt 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 738 tgctcccctagttaaccagtgaaatgtcaatagttcagcctctaagacagttcactggtt 679
Query: 241 -gacttttgttgtttagggctatcttgtgcattttgtggtgtttagaaatagcaagcctg 299
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ag-cttttgttgtggagggctatcttgtgcattttgtggtgtttagaaatagcaagcctg 620
Query: 300 atctctacccataaatcttcataacatacctcctaccaccc-tgagccccagccgtggta 358
|||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||
Sbjct: 619 atctctacccataaatcttcataaaatacctcctacctcccctgagccccagccgtggta 560
Query: 359 actcaaagcgttttt-agatactgtcaattgtcccctagtataatggtggctgtcattca 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 actcaaagcgttttttagatactgtcaattgtcccctagtataatggtggctgtcattca 500
Query: 418 gaaatagtggcctggccatatctgtgcatatcatgttctcctgttttaagaaacttttta 477
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaaatagtggcctagccatatctgtgcatatcatgttctcctgttttaagaaacttttta 440
Query: 478 agtctacgttttacatttagctccatgatccagaaggagattttttttttt--ctttttg 535
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 439 agtctacgttttacatttagctccatgatccaga-ggagatttttttttttttctttttg 381
Query: 536 agacaggatttcctgtagcctcaaactcattatgtagctgaggacaacct 585
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agacaggatttcctgtagcctcaaactcattatgtagctgaggacaacct 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space: 561200
Effective search space used: 561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_d19.g1 MSMg01no446_d19.g1 CHROMAT_FILE:
MSMg01no446_d19.g1 PHD_FILE: MSMg01no446_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:42 2005
(269 letters)
>mm_chr3_65236739_65237407
Length = 669
Score = 489 bits (253), Expect = e-143
Identities = 265/269 (98%)
Strand = Plus / Plus
Query: 1 ctgaatgaacttggctattgcatgagtctttagtctacctcgtttttaagccctgggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaatgaacttggctattgcatgagtctttagtctacctcgtttttaagccctgggagg 260
Query: 61 ccttggttcacatggccaactaaagcagcaaatacttcaacatctttgtatggctataag 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttggttcacgtggccaactaaagcagcaaatacttcaacatctttgtatggctataag 320
Query: 121 gagccatcgactctgggtatctattttaactatttaggaaggattaggagatatagcctt 180
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagccatcgactctgggtattttttttaactatttaggaaggattaggagatatagcctt 380
Query: 181 gttggagaaggtgtcactggagtgggcttgaggtttcataaggccacatcaggcccagtc 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gttggagaaggtgtcactggagtgggcttgaggtttcaaaaggccacatcaggcccagtc 440
Query: 241 tctctatctgcctgctgtttctaagatgt 269
|||||||||||||||||||||||||||||
Sbjct: 441 tctctatctgcctgctgtttctaagatgt 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
