BAC Information

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BAC

Clone NameMSMg01-446I03
Chromosome3 (Build37)
Map Location 130,282,364 - 130,282,557
singlet/doubletsinglet
Overlap geneCol25a1
Upstream geneElovl6, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845
Downstream geneAgxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446I03.T7 (MSMg01no446_i03.b1)MSMg01-446I03.TJ (MSMg01no446_i03.g1)
ACCAG535185AG535186
length745789
length of high quality
(start - end)
194 (121 - 314)260 (54 - 313)
definitionCHROMAT_FILE: MSMg01no446_i03.b1 PHD_FILE: MSMg01no446_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:03 2005CHROMAT_FILE: MSMg01no446_i03.g1 PHD_FILE: MSMg01no446_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCGAGGTGCGCGGAATTCCA
GAAAGAGTTGCGAACTTAGGAGAATATATTATCTGAATCTACTATTATTT
CTAAGATCAAACCTTCACCTTCCAGTAATTAGGTTCATTAAAAAGTACTT
CAAAGTTAATAGCGTCCTTGCTGCTGATATTCATTTACAATCGCTGTATG
AAGAAACTCAGTCCATCCTAAAATTGGAGCAGCAAGGCTCAGGAGGTTTG
TTGTCAACGTGCCCTGAGGGCTCAAGAGGGTTTGCTGTTTGGTAAATCAG
CTGCTACTTCCGATTTACTAGTTTGCCNCAAGGGNATCCGGCGGCAGAGC
TGGTTCTTATTTAACCAGACGAGCAAATGAAGTCGTTAAGAATTTCTGAA
CGCATAGTTGGAAGGCAGGTGCATGTGTTGTGAAGTGCTACACTTGTGTC
TCCCTCAAACCGGATCACGTGTTAGCGTGCTCCAAGTGGCCCTCGGACTG
AGTGCACGAGTAGAGTGCGAGCCTCGGCACTAATGTATGTGTCTTCCCGA
GCCTCCTGTACATCCCTTTCACTCATCGTCCACTTATTCGTTCTCCGGTC
ATCGGCCCTTACAATTCATCCCATACGTTCGTTCCCCATATTTCCCCCCC
CCTCCATTCTTTTTTTTATCTTCTCAAAGAGCATGTCCTTCCTCTTTCCC
CCTGCCTTGGCTCACATATTATTTTCTTCCCTCCTTCGTTCTTTT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCTTGCCGAATTCTCCGTTGTGAATCGGGCTTCAATTCCCATTCGAGG
CTGGTTGGTTAGCCCTCTAACAGACTGGCCACCATTGTGCTGGTGAGCAG
GTTGCCTGGATGATTGGTAGTGTTGCATCTGGGGTCAATAGCTGAGTAAG
ACAATTGATGACAACCATTCCCCTAAATCTATAACACCTTTCTAGCTCCA
TGAGGACCACTCAGCAATAAGGAAGCCTTTGGCCTATCTCCAGTTTGGCT
GATTTATCTGTGTACTTTTATCAACACATGTGATGTCATACAGTCTGGTT
CTTGATGGCAACCAAAAGCAGTTTCAATCACTCTGCACTGGCGGATGTGG
AAGTTGACCCCCCCCATTTCCCTTTTTCTCCCCCTTTATGTGTTTTTCTC
CTTTTTTTCCCTCTTTCCATCCTTTCTTCTCCTCATCCCCTTTTCTCTCA
TATTACCCTTATTCCCCCGTTATCATTCTATTTCCCTTTTCCTCTCCTTT
CCCCCCTTCCCCTCTTTTTCTCCCATTTATTCCCCCCTTTTTCCCTCCCT
TCTCTTTTTTTTCCCTGTGTTTTTCCTTTCTCCTTTTTCGTATCCTTTTT
TTTTCCCTCTTTATTCCTCCTTCTATGTCCTAACTCATCTCTCCATTTCC
CCTCTTTCCTTTTCCCACTCTTATTTTTCTACTTCCTCCATTATTCCTTC
TCACATTCTCTCTTTCTTCTTTTCTTTCCTCCATATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_i03.b1 MSMg01no446_i03.b1 CHROMAT_FILE:
MSMg01no446_i03.b1 PHD_FILE: MSMg01no446_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:03 2005
         (194 letters)



>mm_chr3_130282164_130282757
          Length = 594

 Score =  344 bits (178), Expect = 2e-99
 Identities = 190/194 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagtaattaggttcattaaaaagtacttcaaagttaatagcgtccttgctgctgatat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tccagtaattaggttcattaaaaagtacttcaaagttaagagcgtccttgctgctgatat 260

                                                                       
Query: 61  tcatttacaatcgctgtatgaagaaactcagtccatcctaaaattggagcagcaaggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatttacaatcgctgtatgaagaaactcagtccatcctaaaattggagcagcaaggctc 320

                                                                       
Query: 121 aggaggtttgttgtcaacgtgccctgagggctcaagagggtttgctgtttggtaaatcag 180
           |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaggtccgttggcaacgtgccctgagggctcaagagggtttgctgtttggtaaatcag 380

                         
Query: 181 ctgctacttccgat 194
           ||||||||||||||
Sbjct: 381 ctgctacttccgat 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)