BAC Information

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BAC

Clone NameMSMg01-446K03
Chromosome3 (Build37)
Map Location 53,770,125 - 53,770,624
singlet/doubletsinglet
Overlap genenone
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
Downstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K03.T7 (MSMg01no446_k03.b1)MSMg01-446K03.TJ (MSMg01no446_k03.g1)
ACCAG535281AG535282
length1,131738
length of high quality
(start - end)
---503 (69 - 571)
definitionCHROMAT_FILE: MSMg01no446_k03.b1 PHD_FILE: MSMg01no446_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:13 2005CHROMAT_FILE: MSMg01no446_k03.g1 PHD_FILE: MSMg01no446_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATATAACTTAATTGTATACCTTATTTCACAAAGACATAAGCAGAACC
ATTAGCTTTCCCACCATAAGACACAAATCATCTTGCTATTCTATCTTATT
ATCAAATCACTAGACGCTAATCCAATTACTACCACACTAATTAACATCAC
TACCACACAACCGCACACCGACATGTACATATCTAATACCTTCATTCTAC
TTCAATATCTATATTAATTTCTACGATAATATTGCTTCCTTAACTCACTC
ACCATTCATCCATTTTTTTCGCTACCTCATCTGATTCCGTTACAACCACA
TATTATATCATCGTTACCAACCATTCAAATACAATCCAATACCACCCTAT
ATGAATCTCCTTAACTATACTAGCCTATACTCTCTTTATTTTCTTATTTT
CCTCAACCCTCTCACAACCATATCTCTACGAGTCACATAACCACATAAAC
GACGATAACTCTCTCAATATCCTATATACAAACACCACACTAAATCTCAT
CTAAATTACTATAGTATCTATACTACACTCGACTCACTATAAATCGCTCC
ACTCTTCTCTTAACGAGCCTTTTCATAACGCTCCAATACGCGCATACTCC
CCTAATAATACATTTTCAATACACTCTATCAACTATTCCTCCCACCTCTT
ACCATCTCACACATCAATAGTAATATACATACAATATCTCTCACCGTTAC
ACCTACCTTGTATTCACTCGACGTCTTCTCTCCATAGTTATATTAATCAC
TTCCACACAACTCTATAACTACTACCCATAAAGTATCCACTACTCTCCTN
ACACGTTTCTCCATATCACTCCTGTTCCCCGCATACCTCCCCATCACAGC
CTATCTCCGCGACACTATCTATCTATATATTAATTGCCTATCATTCACGC
AACGTTAATGGAGTATCATCACATACCTGAATATATTCTTGCTCTCATCC
GCCCCCAATATATTATCCACGCTCACACCCGACTATACAGAATCACCACA
CAATATATCACCAAGCTCAACAATATAGCATAATTCACCGACACGTCATN
TTAACTCGACACATTCGCACACATCTCAACACGCGCATATTGTGCTTATC
ATCAGCCCTTACATATCACCTACACTGTCTN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCACGTCTATGCATTAAGTGTTACTAAAAATAC
ATTTGTCATTTTTGATTTAGAAAAAATAACCTTTGACTCTTTAGGATAAA
GAATGAAAAATATAGAAAAGCAGGTTCACAAATATTTTAAATATATAAGG
ACTTAGATTATTAGATTTCTGGTATTAAAGAAAGGGGCTCTAAAATACAG
TTCCTACAAAGTGAAAAATTTTCTTTACCTACAAGGGGAAAACATATTCT
GTCATAGGAATGATCTGTTTTGCTTTTTCAGGCTCATTTTGAACATTTTG
ATAGACAAGATTTGCTTTAATTCAAGTCTTCATTCACAACACAGTACTCA
GCTCACTCCCCTGAAGGATAGTTGTCAATGGATTTTTACTTTGGATTAAT
AAGAATTTTATGTTGAAGTTTTTGCAACTCTATTCTGGATATTGACTTCC
TATTTTGTAGGAAAATAAGCTGAAATACCGTAAACCTCAAAACCAAAATA
TAAAATACAAACCAGAATAACAAGTGATGGTCTAGTAGGCCAGCTTTTTA
CTTTAGCCTTTTGTCTATGTCTACAAACTTGAGAATTACTCAGATGGCAG
AATTGTTACTTGCCACCAAGGTCATGGGCATCTTAAATGTGGTGGTTTTC
TAGCACCAATTTTAAAGGGAGAATATACATCCCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k03.g1 MSMg01no446_k03.g1 CHROMAT_FILE:
MSMg01no446_k03.g1 PHD_FILE: MSMg01no446_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:13 2005
         (503 letters)



>mm_chr3_53769922_53770824
          Length = 903

 Score =  907 bits (469), Expect = 0.0
 Identities = 493/501 (98%), Gaps = 2/501 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gtctatgcattaagtgttactaaaaatacatttgtcatttttgatttagaaaaaa-taac 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 gtctatgcattaagtgttactaaaaatacatttgtcatttttgatttagaaaaaaataac 263

                                                                       
Query: 63  ctttgactctttaggataaagaatgaaaaatatagaaaagcaggttcacaaatattttaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttgactctttaggataaagaatgaaaaatatagaaaagcaggttcacaaatattttaa 323

                                                                       
Query: 123 atatataaggacttagattattagatttctggtattaaagaaaggggctctaaaatacag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atatataaggacttagattattagatttctggtattaaagaaaggggctctaaaatacag 383

                                                                       
Query: 183 ttcctacaaagtgaaaaattttctttacctacaaggggaaaacatattctgtcataggaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 384 ttcctacaaagtgaaaaattttctttacctacaaggggaaaacatattctgtcatagaaa 443

                                                                       
Query: 243 tgatctgttttgctttttcaggctcattttgaacattttgatagacaagatttgctttaa 302
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgatcagttttgctttttcaggctcattttgaacattttgatagacaagatttgctttaa 503

                                                                       
Query: 303 ttcaagtcttcattcacaacacagtactcagctcactcccctgaaggatagttgtcaatg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcaagtcttcattcacaacacagtactcagctcactcccctgaaggatagttgtcaatg 563

                                                                       
Query: 363 gatttttactttggattaataagaattttatgttgaagtttttgcaactctattctggat 422
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 564 gatttttactttggattaataagaattttatgttgaagtttttgcaattctattctgaat 623

                                                                       
Query: 423 attgacttcctattttgtaggaaaataagctgaaataccgtaaacctcaaaaccaaaata 482
           ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 624 attgatttcatattttgtaggaaaa-aagctgaaataccgtaaacctcaaaaccaaaata 682

                                
Query: 483 taaaatacaaaccagaataac 503
           |||||||||||||||||||||
Sbjct: 683 taaaatacaaaccagaataac 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)