BAC Information

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BAC

Clone NameMSMg01-446K12
Chromosome3 (Build37)
Map Location 145,480,691 - 145,481,144
singlet/doubletsinglet
Overlap geneDdah1
Upstream geneClca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
Downstream geneLOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K12.T7 (MSMg01no446_k12.b1)MSMg01-446K12.TJ (MSMg01no446_k12.g1)
ACCAG535299AG535300
length736780
length of high quality
(start - end)
453 (63 - 515)240 (66 - 305)
definitionCHROMAT_FILE: MSMg01no446_k12.b1 PHD_FILE: MSMg01no446_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:15 2005CHROMAT_FILE: MSMg01no446_k12.g1 PHD_FILE: MSMg01no446_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXAATCGAGAGAAGCCGCGGAATTCATAGA
ATTTACAATAGAGTTTCTTCTTCTATAAGTAATAAAGATGTTCATAAGAG
ATCTTCTGGGGGAAACCTAGTTCAATTCCCAGCATCCACATGGTACTTCG
AAACTGTCTATAACTCCAGTTCTAGGGTATCCAATACCCTCACACAGACA
TATGTGCAGGCAAAACACTAATGCATATGAAATAAAAATAAATCTTATCA
TTTTTTAAAAAAAGAGGTCTTCTAGAGGTGTCAAGTTTGACTACACGTTC
TTTTCACTGTTGCTGATTTATATGCCATCATTGTAAGGCAGTTTGGGATA
TTTTACTAATTGCCATCCCAATGCCTGAAATTCCCTCCCACTTCCATTCC
TGTTGTGGGAGCGTGGCTGATTCCTTCAGAGTATGAGCTCAGGGAATTCA
TCTGAGTGGGGTTGTGTCACACACTCAGCCTTGCCTCAACTATTCACTTC
ACACAAGCATACATCTTCTCTTTGGTACCCACAGGTACTAACCTGCACAC
ACTAAACAGTACGGAAGCCAATGAGATGGAGCTATTGGCCTGAGCACTGA
GCCACAGTCTCAGTATAGGTGGTTCCAAGAAGAGGAACTCATGTTCGTAT
CTTGTTTTGTCCCTCTTTAATCCCTACACAGCAATCGCAATTTCTCTAAA
TACTGTCTACTGAACGACCGTGTCTGCCATTCATAG
GGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTCCCCAGCACCCACATGGTGGCTTAGAATCTTCT
ATAACTCCTGATCCCTGATTCTAGGGGATTTGATGGCTTCTTCTGACCTC
CCCAGGACTCACATGACAATTACAGAACCTTAGAGGCATACAAAGAGGAA
TGGGGGACGGGGGCACGGCATAGACCTTTAATCCCAGCACTTGTTAAGCA
GAAGCCGTCAGATCTCTGTGAGTTAGAGGCCAAGCCGGGTCTAAAGAGCT
GGTTCCATATTGNATTGCTATACGAAGAAATCTTGTCTCAAAAGAAGTGT
GTGTGTGTGTGTTGGGGGGGGGCCACCCCCCCCCCTTTCTTCTTCCTTTT
TTCCCCCCCCTTCTCCTCTCTTCTCTCGTCTTTTCTTCTTTTGCTTTTAT
CCTTTTTTCCTAACTTCTCCCACCTATCTCTATTTTTCCTCCCCTCCCTC
CTTTTCGCTTCCTCCCTTTCCCCTATGCTTCTATTTCCCCTCCTGCCTTT
CCCGTTCTCCTTTTTCCTCCTCTCTCGTTACTCCCCATTCCCCCTTTCCT
TCCCCCTCCCCCTCTTCTCTCTTCTCCCTCGTGTTTTATTTCCCTCCCCA
AGTCGCTATAACTAATCTTTTTTTTTTCTATCCCCACTACTTCTACCCTC
TTTCCGTCTTATTATTCACCCCGCCTTCGTTCTCCTTATTTCAGTTTCTT
ACCTTCTCTTGTCCCTCTCCTTTTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k12.b1 MSMg01no446_k12.b1 CHROMAT_FILE:
MSMg01no446_k12.b1 PHD_FILE: MSMg01no446_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:15 2005
         (453 letters)



>mm_chr3_145480492_145481344
          Length = 853

 Score =  832 bits (430), Expect = 0.0
 Identities = 448/454 (98%), Gaps = 1/454 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttcttcttctataagtaataaagatgttcataagagatcttctggggg-aaacctagt 59
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 200 gtttcttcttctataagtaataaagatgttcataagagatcttctggggggaaacctagt 259

                                                                       
Query: 60  tcaattcccagcatccacatggtacttcgaaactgtctataactccagttctagggtatc 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 260 tcaattcccagcatccacatggtacttcgaagctgtctataactccagttctagggtatc 319

                                                                       
Query: 120 caataccctcacacagacatatgtgcaggcaaaacactaatgcatatgaaataaaaataa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caataccctcacacagacatatgtgcaggcaaaacactaatgcatatgaaataaaaataa 379

                                                                       
Query: 180 atcttatcattttttaaaaaaagaggtcttctagaggtgtcaagtttgactacacgttct 239
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atcagatcattttttaaaaaaagaggtcttctagaggtgtcaagtttgactacacgttct 439

                                                                       
Query: 240 tttcactgttgctgatttatatgccatcattgtaaggcagtttgggatattttactaatt 299
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttcactgttgctgaattatatgccatcattgtaaggcagtttgggatattttactaatt 499

                                                                       
Query: 300 gccatcccaatgcctgaaattccctcccacttccattcctgttgtgggagcgtggctgat 359
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gccatcccagtgcctgaaattccctcccacttccattcctgttgtgggagcgtggctgat 559

                                                                       
Query: 360 tccttcagagtatgagctcagggaattcatctgagtggggttgtgtcacacactcagcct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccttcagagtatgagctcagggaattcatctgagtggggttgtgtcacacactcagcct 619

                                             
Query: 420 tgcctcaactattcacttcacacaagcatacatc 453
           ||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcctcaactattcacttcacacaagcatacatc 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)