Query= MSMg01no446_k20.b1 MSMg01no446_k20.b1 CHROMAT_FILE:
MSMg01no446_k20.b1 PHD_FILE: MSMg01no446_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:17 2005
(620 letters)
>mm_chr3_153649143_153650168
Length = 1026
Score = 1106 bits (572), Expect = 0.0
Identities = 606/620 (97%), Gaps = 6/620 (0%)
Strand = Plus / Minus
Query: 7 ggaattctgaatcatattgcgaatttaccatggttttaaaaagagagcaatactttagaa 66
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ggaattctgaatcatactgagaatttaccatggttttaaaaagagagcaatactttagaa 767
Query: 67 gtagtcaagcaaagtctttgtttgagctttctggtgtttgtctagattactaaaacaagt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 gtagtcaagcaaagtctttgtttgagctttctggtgtttgtctagattactaaaacaagt 707
Query: 127 taggatctgtgaagcatgataattattcagtaaggtttccagaaagctttaaaaggtaat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 taggatctgtgaagcatgataattattcagtaaggtttccagaaagctttaaaaggtaat 647
Query: 187 ataacctggtggttaaatacagggcagagttcaaaggcggcccttgatgggttcaagtca 246
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 646 ataacctggtggttaaatacagggctgagttcaaaggcggcccttgatgggttcaagtca 587
Query: 247 gctacaatgaccctgtgcacatctattgatt----atcagcatgtttaacaacttcatgg 302
||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 586 gctacaatggccctgcgcacatctattgattgattatcagcatgtttaacaacttcatgg 527
Query: 303 tccacctttagccaccaaaacttttctgttaaaggtgtaaagtcaggactatcaaggtca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tccacctttagccaccaaaacttttctgttaaaggtgtaaagtcaggactatcaaggtca 467
Query: 363 tggtcatggggaaacaatgtgatgataaacttgtgcaatcaaaaaaa--gtgagtaagag 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 466 tggtcatggggaaacaatgtgatgataaacttgtgcaatcaaaaaaaaagtgagtaagag 407
Query: 421 gctgggatcagcaaagacaaagaaaaataagcttaattcagtgcggaagatgctgttacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gctgggatcagcaaagacaaagaaaaataagcttaattcagtgcggaagatgctgttacc 347
Query: 481 actgcaactgttgatgcaggagccaacaagaagcttctcttttcagttttataacgtcta 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 346 actgcaactgttgatgcaggagccaacaagaagcttctcttttcagttttataatgtcta 287
Query: 541 tatctttttaattaatacgcacaaaatatacaaagtcaccagctaaacttaagagaactt 600
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 286 tatctttttaatttatacgcacaaaatatacaaagtcaccagctaaacttaagataactt 227
Query: 601 gaattattggtaaagccaat 620
||||||||||||||||||||
Sbjct: 226 gaattattggtaaagccaat 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1026
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1016
Effective search space: 619760
Effective search space used: 619760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_k20.g1 MSMg01no446_k20.g1 CHROMAT_FILE:
MSMg01no446_k20.g1 PHD_FILE: MSMg01no446_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:17 2005
(279 letters)
>mm_chr3_153435518_153436196
Length = 679
Score = 526 bits (272), Expect = e-154
Identities = 278/280 (99%), Gaps = 2/280 (0%)
Strand = Plus / Plus
Query: 1 aagcctctccctctacagta-cctacccatctaaccatgtctaaccatgtcttcatacaa 59
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcctctccctctacag-accctacccatctaaccatgtctaaccatgtcttcatacaa 259
Query: 60 cagggattctagtactcagagacagtaaccttcccctctactcacaaggctaagcctccc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagggattctagtactcagagacagtaaccttcccctctactcacaaggctaagcctccc 319
Query: 120 ccaattcctccagtgctgtgcatacattgcttagacattacctatgtcccttcttattac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaattcctccagtgctgtgcatacattgcttagacattacctatgtcccttcttattac 379
Query: 180 cagggtttggactgagggtgcaggtccattggtaaagcgcttgccaggcatgcaggatga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagggtttggactgagggtgcaggtccattggtaaagcgcttgccaggcatgcaggatga 439
Query: 240 cctgagtttgatcaccaactccacataaatcagatgtggt 279
||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctgagtttgatcaccaactccacataaatcagatgtggt 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
