Query= MSMg01no447_a21.b1 MSMg01no447_a21.b1 CHROMAT_FILE:
MSMg01no447_a21.b1 PHD_FILE: MSMg01no447_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:46 2005
(521 letters)
>mm_chr3_21531834_21532754
Length = 921
Score = 882 bits (456), Expect = 0.0
Identities = 485/496 (97%), Gaps = 4/496 (0%)
Strand = Plus / Minus
Query: 26 cttttctgagagcggcagtcttggaggtgggggaggaggctaaaactaagcaatgtttgc 85
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 cttttctgagagcagcagtcttggaggtgggggaggaggctaaaactaagcaatgtttgc 862
Query: 86 atttgctaatcataataaagaggctattaggagctgactgattaatcggccactgcagat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 atttgctaatcataataaagaggctattaggagctgactgattaatcggccactgcagat 802
Query: 146 ttcaattatagctcagacacttagatgtttatgtgtgtgtgtgtgtgtgtttgagagaga 205
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 801 ttcaattatagctcagacatttagatgttta--tgtgtgtgtgtgtgtgtttgagagaga 744
Query: 206 gagagagtgagagagagagagagatggatacattaagcactggttgtaactggcattgaa 265
||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 743 gagtga--gagagagagagagagatggatacattaagcactggttgtggctggcattgaa 686
Query: 266 acttacttccatagtgtgaatagaaatcaaataattctttctctctaaatgtgctctgtg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acttacttccatagtgtgaatagaaatcaaataattctttctctctaaatgtgctctgtg 626
Query: 326 aaattataaagtgctatgtaaataaattggtgctatttctaatgctcaaagctatgtgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 aaattataaagtgctatgtaaataaattggtgctatttctaatgctcaaagctatgtctt 566
Query: 386 agacttgatgaatatttattattaactcataaagtagagttgtaattaattttatgaaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agacttgatgaatatttattattaactcataaagtagagttgtaattaattttatgaaat 506
Query: 446 tgacatactcaggggatgtatcatttctagcttatctgttaaaccaggtgtatgttttgt 505
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 tgacatactcaggggatgtatcatttctagcttatctgtttaaccaggtgtatgttttgt 446
Query: 506 gaaataattttatatt 521
||||||||||||||||
Sbjct: 445 gaaataattttatatt 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_a21.g1 MSMg01no447_a21.g1 CHROMAT_FILE:
MSMg01no447_a21.g1 PHD_FILE: MSMg01no447_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:46 2005
(445 letters)
>mm_chr3_21385511_21386355
Length = 845
Score = 754 bits (390), Expect = 0.0
Identities = 437/466 (93%), Gaps = 21/466 (4%)
Strand = Plus / Plus
Query: 1 aaacactgaaaagacaggaaattatgtctgcagctcagctccaagcacatatcttgggaa 60
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaacactgaaaaggcaggaaaatatgtctgcagctcagctccaagcacatatcttgggaa 239
Query: 61 actcacaagcatacaagtcaatcagctctagggaaccagatgagggattctgacatcttc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 240 actcacaagcatacaagtcaatcagctctagggaaccagatgagggattctgacgtcttc 299
Query: 121 ccatgactgcactcacatgcctatatccacacagagacgagcacattcatgtaagtcaaa 180
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 300 ccatgactgcactcacacgcctatatccacacacagacgagcacattcatgtaagtcaaa 359
Query: 181 aaataaaatgaatctttaaaagaaacacttttaggggcctgt------------------ 222
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 360 aaataaaatgactctttaaaagaaacacttttaggggcctgttaaaaaaaaaaaaaaaaa 419
Query: 223 ---aaaaaaaacaggtgctcatgcttgccagtgattcattttaaaataatgggtaggagg 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aaaaaaaaaaacaggtgctcatgcttgccagtgattcattttaaaataatgggtaggagg 479
Query: 280 ggacctgaacctagctaacaagatttttcttacatctgaaatattttatttgaccaaaga 339
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggacctgaacctagctaacaagacttttcttacatctgaaatattttatttgaccaaaga 539
Query: 340 taaacagttcttcagagaaaacttgccttgactgctcaagcctaaactaattttttgctt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taaacagttcttcagagaaaacttgccttgactgctcaagcctaaactaattttttgctt 599
Query: 400 acggtttttaatctcacatataattagtatggcattaattatatgt 445
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 600 acggtttttaatctcacatataattagtatggtattaattatatgt 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
