TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGTAATCTCTTTATTATATAATTTGTGCTTACTTTGTTTTCCCC
CCCTGAAACTTGAGTAATTGGGAACATTCATTGAATATATTCATGAGCTC
GTTGGACTTATATTCAGATACTGAACTCCAGTATAATAACAACCTATTCT
TAATAATTTAACTCGTGCTGCTGGACCCTTCATTATTTCACATAAAATAC
CCACAAATGATGCTCCTGCTATTTAGCTATTATTAGAATAGACAATAACA
TTACCAAAGTTAATACTACTCAATGTAAAATATGTTGACATATAAAATTA
ATACTTGACCTAAGTGATATATTAGATGATTAAATTGTTCCAGGGGTTTT
TAGGGATTTTTAAAAAAAAATTTATGGAGTGCATTTGTGTGTATGGAGCT
TTACTCTAATGCAAATAAAAATGAAGCTAGGGTATTATAACTCATTAGCT
TTTATTTAATATTTTATAATAAGAAGAATTGTATACAATCTTGCTTCTTT
GACTTATGTGTAAATTACTTACTGAATTCCAGTTATGTATATATTTTTTT
AATGTTGTAAAAGTTCTTTCAAATGTTTGAGTGCTTTGTCTACATTTGTG
TCTATCCACCATCTGTGTGCTTGGCACTCTTGGATCTCCTAAGACTTGAG
TTAAAATGATTGTGAATAAATATGTAAGTTCTTACTTGAAAATTGAATTC
AGATCCTCC

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGA
GAAGCACCTGAAAAATTGCTCAGCATCCTTAATCATCAGGGAAGTGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACAAGTCAGAATGGCTAAGATC
AAAAATTCAGGAGACAGCAGATGCTGGCAAGGATGTGGAGAATGATGAAC
ACTCCTCCATTGTTGGTGGGATTGAAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGAGGTTCCTCAGAAAACTGGATATAGTACTACTGTAGGATCCT
GCAATACCTCTCCTCAACATATATCCAGAAGATGTTCCATCTGGTAAGTA
GGACACATGCTCCAACTATGTTCATAGCAGCCTTATTTATAATAGTCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATGCAGAAAAT
GTGGTACAGTTACACAATGTTCTACTACTCAGCTATTAAAAAGAGTGAAT
TTTTGAAATTCCTAGGCAAATGGATGGGCATCTTCCTGAGTGAGGTAACC
CAATCCCAAAAGAAATCTCGTGATATGTACTCGCTGATAAATGGATATTA
GCCCACAAACTTGGAATACCCAATAAAATAGAAACATTTTTCCAAAAAAA
TGTAACCCTAGATTAAACAAAAACAACAGGTGGACACCTTGGTCCCCTCT
TTATAATCCTGAACAAAA

Query= MSMg01no447_e12.b1 MSMg01no447_e12.b1 CHROMAT_FILE:
MSMg01no447_e12.b1 PHD_FILE: MSMg01no447_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:07 2005
         (600 letters)



>mm_chr3_74210908_74211908
          Length = 1001

 Score =  996 bits (515), Expect = 0.0
 Identities = 579/605 (95%), Gaps = 14/605 (2%)
 Strand = Plus / Minus

                                                                       
Query: 2   tatt-atataatttgtgcttacttt-gttttccccccctgaaacttgagtaattgggaac 59
           |||| ||||| |||||||||||||| |||||  |||||| |||||| |||||||||||||
Sbjct: 634 tattaatatactttgtgcttactttggttttttcccccttaaactttagtaattgggaac 575

                                                                       
Query: 60  attcattgaatatattcatgagc-tcgttggacttatattcagatactgaactccagtat 118
           || ||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct: 574 atgcattgaagatattcatga-catcgctggacttatattcagatactgaactccagtat 516

                                                                       
Query: 119 aataacaacctattcttaataatttaactcgtgctgctggacccttcattatttcacata 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aataacaacctattcttaataatttaactcgtgctgctggacccttcattatttcacata 456

                                                                       
Query: 179 aaatacccacaaatgatgctcctgctatttagctattattagaatagacaataacattac 238
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 455 aaatacccacaaatgatgctcctgttatttagctattattagaatagacaataacattac 396

                                                                       
Query: 239 caaagttaatactactcaatgtaaaatatgttgacatataaaattaatacttgacctaag 298
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 caaagttaatactacacaatgtaaaatatgttgacatataaaattaatacttgacctaag 336

                                                                       
Query: 299 tgatatattagatgattaaattgttccaggggtttttagggatttttaaaaaaaaattt- 357
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||    ||| 
Sbjct: 335 tgatatattagatgattaaattgtttcaggggtttttagggatttttaaaaa----tttt 280

                                                                       
Query: 358 --atggagtgcatttgtgtgtatggagctttactctaatgcaaataaaaatgaagctagg 415
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 279 ttatggagtgcatttgtgtgtatggagctttactctaatgtaaataaaaatgaagctagg 220

                                                                       
Query: 416 gtattataactcattagcttttatttaatattttataataagaagaattgtatacaatct 475
           ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 219 gtattataactcattagcttttatttaatattttataataagaa---ttgtatacaatct 163

                                                                       
Query: 476 tgcttctttgacttatgtgtaaattacttactgaattccagttatgtatatattttttta 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tgcttctttgacttatgtgtaaattacttactgaattccagttatgtatatattttttta 103

                                                                       
Query: 536 atgttgtaaaagttctttcaaatgtttgagtgctttgtctacatttgtgtctatccacca 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 atgttgtaaaagttctttcaaatgtttgagtgctttgtctacatttgtgtctatccacca 43

                
Query: 596 tctgt 600
           |||||
Sbjct: 42  tctgt 38


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space:   584690
Effective search space used:   584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)