BAC Information

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BAC

Clone NameMSMg01-447O07
Chromosome3 (Build37)
Map Location 146,269,247 - 146,269,487
singlet/doubletsinglet
Overlap geneDnase2b, Uox
Upstream geneCyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473
Downstream gene4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447O07.T7 (MSMg01no447_o07.b1)MSMg01-447O07.TJ (MSMg01no447_o07.g1)
ACCAG536237AG536238
length734854
length of high quality
(start - end)
243 (83 - 325)132 (85 - 216)
definitionCHROMAT_FILE: MSMg01no447_o07.b1 PHD_FILE: MSMg01no447_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:57 2005CHROMAT_FILE: MSMg01no447_o07.g1 PHD_FILE: MSMg01no447_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCATACGG
AGCCGCGGAATTCAAAATGGTATCAAACTATAAACTCTCAAAGCCTGCCT
CCACTGACATACTTCCTCCAGCATGGCCACGCCTCCATAGACTCCCCGGC
CAGCACCAGCCACTGGGACTAATAGTCAATGCACAAGATAATGCACAAGA
TAATCTCATTCAAACAACCACAGCCATTGAACCTGAAGTGGGAGCACCAA
ATCCAGCATGTAATACCTGAAAGAGTCGGTAGATAATAGCCTGCATAAGA
ACTAAGGCCAGTCTCCGCCAGCTCTTTTTTTTTAGAACAGGAAGTCAGTG
TTGGAACCCCACCGTGTACAATGCGGGTAGAGATCTACAGCCATGGCAAC
TATTTAGTGTGTATAAAGGACATCATTTGGAGAGGATGGGCATCCCTGGT
GAGGGTCTTTGTTTAACTAGGTTAATTCCAAATGGATGTAAATTTATCCA
CCTATATGATTAGAATAATAATTACAATGTCCCCTCTTATAATCAATGCA
AGAAGTACAAAGGAAAAGCATAAAGCAGTCAGTCTGGTGCCTGGCAAACA
TGTGCTCAATGTTATTTATAATCATCACTGATAAACAGCAATCACTTGCC
CAATTTTGCGTGAAATAGTCCTTATGCATAGAGATAATAATGAAGGCCCC
TCCAATCCGGGAGCCCGGTGCGTAAGATCAAGGG
CAATTCTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAGTACTTACAC
CCATGTAGGAGGTGTTCTTGAGTTGAATCCTGGAACTTCAGTAAACACAC
TTTGCCGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGA
GGACCTGCTGCTTCAGTAAACACACTTTGCCGTGTGTGTGTGTGTGTGTG
CGTGTTTGTTTTTTTTTTTTTTTTTTTATTCTTTCTTTTCTTTTTCTTTT
TCTTTCCTCCCTCCTTATCCCTTTTTTTTTTTTCCCTCTCTATTTTCTCT
TCTCACTTCTTCTCTTTTTTATTTCCTCCTTTCCCTGTTTTTTTTTCCTT
ATTCTCCTCCTTACTTATTTTTTCTCCCTCTACTTATCTCCTCTTCTTTT
CTTCTCTCCAATTCCTTTCCTTTCATCCATCTTTACTCCTTATCTTCTCT
ATTCTTACTATTCTTCCATTCTTTTCTTTTATCTTCTTTTACTTTTCCTC
TTTATTTTCTTTTTTCCACTCCTTTTACTTTCCATTCTTTCTTTCTCCCT
TCATTGCTTTTTATCGATCTTTTTATCTATTCCTTTATACATCTCTTTTC
TTTACTTCCCTTCTTATTTCTTTTTTCTCTCTTTCTTTCTTCCCTTTTTT
TTCTTTCTTATCTTTTTTTTTTTACTTTTTCCCCTCCATTTTTTCCCCTT
CTATCTTCTTCCATCTAAACTTTCCTCCCTACTTATTTTCTCTTTTCTTA
TTTACTCTTTCTCTTTTAATCCTCTCTTTTTCTTTCTTTCCTCCATCTCT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_o07.b1 MSMg01no447_o07.b1 CHROMAT_FILE:
MSMg01no447_o07.b1 PHD_FILE: MSMg01no447_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:57 2005
         (243 letters)



>mm_chr3_146268907_146269549
          Length = 643

 Score =  381 bits (197), Expect = e-110
 Identities = 231/247 (93%), Gaps = 10/247 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactctcaaagcctgcctccactgacatacttcctccagcatggccacgcctccatagac 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 581 aactctcaaagcctgcctccactgacatacttcctccagcatgcccacgcctccatagac 522

                                                                       
Query: 61  t-ccccggccagcaccagccactgggactaatagtcaatgcacaagataat---gcacaa 116
           | |||| ||||||||||||||||||||||||||||||||||||||||||||   | ||  
Sbjct: 521 tccccccgccagcaccagccactgggactaatagtcaatgcacaagataatgggggac-- 464

                                                                       
Query: 117 gataatctcattcaaacaaccacagccattgaacctgaagtgggagcaccaaatccagca 176
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ----atctcattcaaacaaccacagccattgaacctgaagtgggagcaccaaatccagca 408

                                                                       
Query: 177 tgtaatacctgaaagagtcggtagataatagcctgcataagaactaaggccagtctccgc 236
           || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 407 tggaatacctgaaagagtcggtagataatagcctgcataagaactaaggccggtctctgc 348

                  
Query: 237 cagctct 243
           |||||||
Sbjct: 347 cagctct 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)